Sciurus carolinensis (gray squirrel): 124961494
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Entry
124961494 CDS
T08117
Name
(RefSeq) POU domain, class 2, transcription factor 1 isoform X1
KO
K09364
POU domain transcription factor, class 2
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar05168
Herpes simplex virus 1 infection
ncar05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
124961494
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
124961494
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncar03000
]
124961494
03021 Transcription machinery [BR:
ncar03021
]
124961494
Transcription factors [BR:
ncar03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
124961494
Transcription machinery [BR:
ncar03021
]
Eukaryotic type
RNA polymerase III system
Other transcription-related factors
Octamer transcription factors
124961494
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
POU2F1_C
Pou
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
124961494
NCBI-ProteinID:
XP_047376030
LinkDB
All DBs
Position
12:complement(115369669..115540008)
Genome browser
AA seq
759 aa
AA seq
DB search
MLDCSDYVLDSRMNNPSETSKPSMESGDDPTGTQTNGLDFQKQPVPVGGAISTAQAQAFL
GHLHQVQLAGTSLQAAAQSLSVQSKSNEESGDSQQPSQPSPQPSVQAAIPQTQLMLAGGQ
ITGLTLTPAQQQLLLQQAQAQAQLLAAAVQQHSASQQHSAAGATISASAATPMTQIPLSQ
PIQIAQDLQQLQQLQQQNLNLQQFVLVHPTTNLQPAQFIISQTPQGQQGLLQAQNLLTQL
PQQSQASLLQSQPSITLASQPATPTRTIAATPIQTLPQSQTTPKRIDTPSLEEPSDLEEL
EQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEK
WLNDAENLSSDSAVSSPSALNSSGQGVEGLNRRRKKRTSIETNIRAALEKSFLENQKPTS
EEITLIAEQLNMEKEVIRVWFCNRRQKEKRINPPSSGGTSSSPIKAIFPSPTSLVATTPS
LVTSSTATTLTVNPVLPLTSAAVTNLPVTAFLPGTTDSTSNNTATVISTAPPASSAVTSP
SLSPSPSASASTSEASSASETSTTQTTSAPLSSPLGTSQVMVTASGLQTAAALQGAAQLP
ANASLAAMAAAAGLSPGLMAPSQFAPGGALLSLSPGTLGGALSPALMSNSTLATIQALAS
GGSLPITSLDATGNLVFANAGGAPNIVTAPLFLNPQNLSLLTSNPVSLVSAAAASTGSSA
PVASLHAASSSAESMQNSLFTVASASGAASTTTTASKAQ
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgctggactgcagtgactatgttctagactcaagaatgaacaatccgtcagaaaccagt
aaaccatctatggagagtggagatgaccctacaggcacacaaaccaatggtctggacttc
cagaagcagcctgtgcctgtcggaggagccatctcaacagcccaggcccaggctttcctt
ggacatctccatcaggtccaactcgccggaacaagtttacaggctgctgctcagtctcta
agtgtacagtctaaatctaatgaagagtcaggggattctcagcagccaagccagccttcc
ccccagccttcagtgcaggcggccatcccccagacccaactcatgctcgctggaggacag
ataacggggctcaccttgacaccggcccagcagcagctgctgctgcagcaggcccaggcc
caggcccagctgctggctgccgccgtgcagcagcactctgccagccagcagcacagtgcg
gctggcgccaccatctccgcctccgctgccacgcccatgacgcagattccgctgtctcag
cctatccagatcgcgcaggatcttcaacagctgcaacagctgcaacagcagaatctcaac
ctgcaacagtttgtgttggttcatccgaccaccaacttgcaaccagcgcagttcatcatc
tcacagacgccccagggccagcagggtctcctgcaagcgcagaatcttctaacacagcta
cctcagcaaagccaagccagcctcctgcagtcgcagcccagcatcaccctcgcttcccag
ccagcaacccccacacgcacaatagcagcaaccccaatccagacccttccgcagagccag
accacaccaaagcgcatcgacactcccagcttggaggagcccagcgacctggaggagctc
gagcagtttgccaagaccttcaaacagaggcggatcaaactcggcttcactcagggtgat
gttgggctcgctatgggtaaactatatggaaatgacttcagccaaactaccatctctcgc
tttgaagccttgaacctcagctttaagaacatgtgcaagttaaagccacttttagagaag
tggttaaatgatgcagagaacctctcatctgattcggccgtctccagcccaagtgccctg
aattcctcagggcaaggagttgagggcttgaatcgtaggagaaagaaacgcaccagcata
gagaccaatatccgtgcggccttagagaagagtttcttggagaatcaaaagcctacctcg
gaagagatcaccttgattgctgaacagctcaatatggaaaaggaggtgattcgggtgtgg
ttctgtaaccgccgccagaaggagaaaagaatcaacccaccaagcagtggtgggaccagc
agctcgcctatcaaagcaattttccccagcccgacctcactggtggcaaccacacccagc
cttgtgacaagcagtacagcaactaccctcacagtcaaccctgtactccccctgaccagt
gctgcagtgaccaacctccctgttacagccttccttccaggcactacagacagcacctcc
aacaacacagccaccgtgatctccaccgcacctccagcttcctcagcagtcacgtccccg
tctctgagtccctccccttctgcctcagcctccacctctgaggcatccagtgccagcgag
accagcacaacacagaccacctctgctcctttgtcctccccgcttgggaccagccaggtg
atggtgacggcatcgggcttgcaaacagctgccgcgctccagggagcagcacagttgcca
gcaaacgccagcctggctgccatggctgctgctgcagggctcagcccaggcctgatggca
ccttcacagtttgcacctggaggtgccttactcagcctcagtccagggaccctgggcggt
gccctcagcccagctctgatgagcaacagtacactggcaactattcaagcccttgcttct
ggtggctctcttccaataacatcactggatgcaactgggaacctagtatttgccaacgca
ggcggcgcccccaacatcgtgactgcccctctgttcctgaaccctcagaacctctctctg
ctcaccagcaacccagtcagcttggtttctgccgctgcagcgtccacagggagctccgca
ccggttgccagccttcacgccgcctccagctcggcagagtccatgcagaactcgctcttc
acggtggcctccgccagtggggctgcctctaccaccaccactgcctccaaggcacagtga
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