Sciurus carolinensis (gray squirrel): 124961518
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Entry
124961518 CDS
T08117
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04115
p53 signaling pathway
ncar04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
124961518
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
124961518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ncar04121
]
124961518
Enzymes [BR:
ncar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124961518
Ubiquitin system [BR:
ncar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
124961518
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
124961518
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
zf-C3HC4_2
Beta-prop_EIPR1
WDR55
Beta-prop_RIG_2nd
EIF3I
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
zf-C3HC4
zf-RING_2
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
zf-RING_UBOX
Beta-prop_EML
zf-C3HC4_3
Beta-prop_DCAF4
zf-RING_5
zf-C3HC4_4
Beta-prop_WDR90_POC16_2nd
RING_XB3-XBAT31
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_Vps41
WD40_like
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_IFT122_1st
zf-rbx1
zf-RING_10
zf_C2H2_10
zf-RING_11
Sina_RING
Motif
Other DBs
NCBI-GeneID:
124961518
NCBI-ProteinID:
XP_047376108
LinkDB
All DBs
Position
12:108740014..108927872
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AA seq
735 aa
AA seq
DB search
MSGSRQAGSGSAGTSPGSSAASSVTSASSSLSSSPSPPSLAASAAALGSGGAAQAAGSGG
LGGPVRPVLVAAAVSGSGGASGGGAVSAGLSRLSCAARPSAGVGGSGSSLGSGSRKRPLL
APLCNGLINSYEDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYV
VDNIDHLYPNFLVNELILKQKQRFEEKRFKLDHSVSSTNGHRWQIFQDLLGTDQDNLDLA
NVNLMLELLVQKKKQLEAESHAAQLQILMEFLKVARRNKREQLEQIQKELSVLEEDIKRV
EEMSGLYSPVSEDSTVPQFEAPSPSHSSIIDSTEYSQPPGFSGSSQTKKQPWYNSTLASR
RKRLTAHFEDLEQCYFSTRMSRISDDSRTASQLDEFQECLSKFTRYNSVRPLATLSYASD
LYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVYEYGTVIQDAVDIHYPENEMTCNSKISCI
SWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDA
KVKLWSTNLDNSVASIEAKANVCCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFK
GHRKAVSYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKGHINEKNFVGLASNGDYIA
CGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALPDGESNVL
IAANSQGTIKVLELV
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgtccggtagccgccaggccgggtcgggctccgcggggacgagccccggctcgtcggcg
gcctcctcggtgacttccgcctcctcgtccttatcctcgtccccgtcgccgccttccttg
gcggcctcggcggcggcgctggggtccggcggggcggcgcaggccgcgggctcgggcggc
ctcgggggcccggtgcggcctgtgctggtggcggccgcggtgtcgggcagcggcggcgcg
agcggcggcggggcggtgtccgcgggcctgtcccggctcagctgcgcggccaggcccagc
gccggcgtaggagggagcggctccagcctgggcagcggcagcaggaagcgtcctctgctc
gcgcccctctgcaacgggctcatcaactcctacgaggacaaaagcaacgacttcgtctgc
cccatctgctttgatatgatcgaggaagcatacatgacaaagtgtggccacagcttttgc
tacaagtgtattcatcagagtttggaggacaataatagatgtcccaagtgtaactatgtt
gtggacaatattgaccatctctatcctaatttcttggtgaatgaactcattctcaaacag
aagcaaagatttgaggaaaagaggttcaaattggaccactcagtgagtagcaccaatggc
cacagatggcaaatatttcaagatttgttgggaactgatcaagataaccttgatttggct
aatgtcaatctcatgttggagttactagtgcagaagaagaaacaactagaagcagagtca
catgcagctcagctacagatcctaatggaattcctcaaggttgcaagaagaaataaaaga
gagcaactggaacagatccagaaggaactaagtgttttggaagaggatattaaaagagtg
gaagaaatgagcggcttatattctcctgtcagtgaagatagcacagtgcctcaatttgaa
gctccttctccatcacacagtagtattattgattctacagaatacagccaacctccaggt
ttcagtggcagttctcagacaaagaaacagccttggtataacagcacattagcatcaaga
cgaaaacgactcactgctcattttgaagacttagagcaatgttatttttctacaaggatg
tctcgtatctcagatgacagtagaactgcaagccagttggatgaatttcaggaatgcttg
tctaagtttactcgatataattcagtacgacctttggccacgttgtcatatgctagtgat
ctctataatggttccagcatagtctctagtattgaatttgaccgagattgtgactatttt
gcaattgctggggttacaaagaagattaaagtgtatgaatatggcacagtcatccaggat
gcagtggatattcattaccctgagaatgaaatgacttgtaattccaaaatcagctgtatc
agttggagtagttaccataagaacctgttagctagcagtgattatgaaggcactgttatc
ctatgggatggattcacaggacagaggtcaaaggtctatcaggagcatgagaagaggtgt
tggagtgttgactttaatttgatggatcctaaacttttagcttcaggttctgatgatgca
aaagtgaagctgtggtctaccaacctagacaattcagtagcaagcattgaggcaaaggct
aatgtgtgctgtgttaaattcagcccttcttctagataccatttggcttttggctgtgca
gatcactgtgtccactactatgatcttcgtaacactaaacagccaatcatggtattcaaa
ggacaccgaaaagcagtctcctatgcaaagtttgtgagtggtgaggaaattgtctctgcc
tcaacagatagccagctaaaactgtggaacgtggggaaaccatactgtctacgttccttc
aagggtcacatcaatgaaaaaaactttgtaggccttgcttcgaatggagattatatagct
tgtggaagtgagaataactccctctacctgtactataaaggactttctaagactttgtta
actttcaagtttgatacagtcaaaagtgttctggacaaagaccgaaaagaagatgataca
aatgaatttgttagtgctgtgtgctggagggcactaccagatggggagtccaatgtgctg
attgctgctaacagtcagggtacaattaaggtgctagagttggtatga
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