Sciurus carolinensis (gray squirrel): 124961647
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Entry
124961647 CDS
T08117
Name
(RefSeq) transcription factor SOX-13 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncar03000
]
124961647
Transcription factors [BR:
ncar03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
124961647
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
124961647
NCBI-ProteinID:
XP_047376454
EnsemblRapid:
ENSSCRG00010020663
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All DBs
Position
12:complement(83679122..83722490)
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AA seq
709 aa
AA seq
DB search
MERAGPAPLPSSWPPCYPGLMAGLRSWRQVPYLHSSLTMSMRSPISAQLALDGAGTMVNC
TIKSEEKKEPCQEAPQSSAPTAESQPADPARAPQDAANPNAPAQVPSTFPQGSGDHPLPG
EVLVFPLSEEGSQVQRSSGFGGIPCESPRLDRSPGVCLSQDCSSPEPDGSPEPKRPGASE
AASGSQEKLDFNRNLQEVVPAIEKLLSSDWKERFLGRSSVETKDVKGTQESLAEKELQLL
VMIHQLSTLRDQLLTAHSEQKNMAAMLFEKQQQQMELARQQQEQIAKQQQQLIQQQHKIN
LLQQQIQQVNMPYVMIPAFPPSHQPLPVTPDSQLALPIQPIPCKPVEYPLQLLHSPPAPV
VKRPGAMAAHHPLQEPSQPLNLTAKPKAPELPSASSSPSLKMSNCGARPPSHGAPTRDLQ
ASPPSLPLGFLGEGDAVTKAIQDARQLLHSHSGALESSPSTPFLKDLLSLDSSPAKERLE
ESCVHPLEEAMLSCDVDGSRHFPESRNSSHIKRPMNAFMVWAKDERRKILQAFPDMHNSS
ISKILGSRWKSMTNQEKQPYYEEQARLSRQHLEKYPDYKYKPRPKRTCIVEGKRLRVGEY
KALMRTRRQDARQSYVIPPQAGQVQMSSSDVLYPRAAGMPLAQPLVEHCVPHSLDPNMPV
IVNTCSLREEGEGTDDRHSVADGEMYRYSEDEDSEGEEKSDGELVVLTD
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atggagagggcaggaccagcaccccttccttcgagctggcctccatgctacccagggctc
atggctggtctccgttcctggaggcaagtcccctacctccattcatctctcacgatgtcc
atgaggagccccatctctgctcagctggccctggatggcgccggcaccatggtgaactgc
accatcaagtcagaggagaagaaggagccttgccaggaggccccccagagctcggcccct
acagctgaatcccagcctgcagacccagcccgagccccccaggatgctgccaaccccaac
gctccagcccaggtgcccagcactttccctcagggctccggggaccatcctctgccaggg
gaggtattagtatttccgctttcagaagagggaagtcaggttcagagaagttcaggattt
ggtgggatcccttgtgagtcaccacgcctggaccgaagcccgggtgtttgtctctctcag
gactgtagctccccggagcctgatgggtccccggaacccaagagaccaggagcctctgag
gccgcttctggaagccaggagaagctggacttcaaccgcaacttacaagaggtggtgccc
gccatcgagaagctgctgtccagtgactggaaggagaggttccttggaaggagctccgtg
gaaaccaaagatgtcaaagggacccaagagagcctggcagagaaggagctccagcttctg
gtcatgatccaccaactgtccaccctacgggaccagctgctgacagcccactcggagcag
aagaacatggcagccatgctctttgagaagcagcagcagcagatggagctggcccggcag
cagcaggagcagatcgccaagcagcagcagcagttgattcaacagcagcataagatcaac
ctcctccagcagcagatccagcaggtcaacatgccttacgtcatgatcccagccttcccc
ccaagccaccagcctctgcctgtcacccctgactcccagctggctttgcccattcagccc
atcccctgcaaaccagtggagtacccgctgcagctgctgcacagcccgcctgccccagtg
gtgaagaggcctggggccatggctgcccaccaccccctgcaggagccctcccagcccttg
aacctcacagccaagcccaaggctcctgagctgcccagcgcctccagctcccccagtctg
aagatgagcaactgcggagcgcgccctcccagccacggggcccccacgcgggacctgcag
gccagccccccgagcctgcccctgggcttccttggtgaaggggatgctgtcaccaaagcc
atccaggatgctcgacaactgctgcacagccacagtggggccttggaaagctcccccagc
accccctttctcaaggacctcctcagcctggactcctctccagccaaggagcggctggag
gagagctgcgtgcacccgctggaagaagccatgctgagctgcgacgtggacggctctcgc
cacttccctgagtcccggaatagcagccacatcaagagacccatgaatgccttcatggtg
tgggccaaggacgagaggaggaagatcctccaagccttcccagacatgcacaactccagc
atcagcaagatccttggctcccgctggaagtccatgaccaaccaggagaagcagccctat
tacgaggagcaggcgcggctgagccggcagcacctggagaagtatcctgactataagtac
aagccgcggcccaagcgcacctgcatcgtggagggcaagcggctgcgcgtgggcgaatac
aaggccctgatgaggacccggcgccaggatgcccgccagagctacgtgatccccccgcag
gctggccaggtgcagatgagctcctcagatgtcttgtaccctcgggcagcaggcatgccc
ctggcacagcccctggtggagcactgtgtcccccacagcctggaccccaacatgcctgtc
atcgtcaacacctgcagcctcagggaggagggcgagggcacagatgacaggcactcagtg
gctgatggtgagatgtaccggtacagcgaggacgaggactcggagggtgaagagaagagt
gacggcgagttggtggtgctcacggactga
DBGET
integrated database retrieval system
