Sciurus carolinensis (gray squirrel): 124961826
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Entry
124961826 CDS
T08117
Name
(RefSeq) transcription initiation factor TFIID subunit 2 isoform X1
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124961826
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ncar01002
]
124961826
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncar03021
]
124961826
03036 Chromosome and associated proteins [BR:
ncar03036
]
124961826
Peptidases and inhibitors [BR:
ncar01002
]
Metallo peptidases
Family M1
124961826
Transcription machinery [BR:
ncar03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
124961826
Coactivators
SAGA/TFTC/STAGA complex
124961826
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
124961826
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M1_N
Peptidase_M1
RPN2_C
AP3D1
Motif
Other DBs
NCBI-GeneID:
124961826
NCBI-ProteinID:
XP_047376812
LinkDB
All DBs
Position
1:20943138..21031055
Genome browser
AA seq
1212 aa
AA seq
DB search
MPSTGAEPFRMNRKKGDKGFESPRPYKLTHQVVCINNINFQRKSVVGFVELTIFPTVANL
NRIKLNSKQCRIYRVRINDLEAAFIYNDPTLEVCHNESKQRNLNYFSNAYAAAVSAVDPD
AGNGELCIKVPSELWKHVDELKVLKIHINFSLDQPKGGLHFVVPSVEGSMAERGAHVFSC
GYQNSTRFWFPCVDSYSELCTWKLEFTVDAAMVAVSNGDLVETVYTHDMRKKTFHYMLTI
PTAASNISLAIGPFEILVDPYMHEVTHFCLPQLLPLLKHTTSYLHEVFEFYEEILTCRYP
YSCFKTVFIDEAYVEVAAYASMSIFSTNLLHSAMIIDETPLTRRCLAQSLAQQFFGCFIS
RMSWSDEWVLKGISGYIYGLWMKKTFGVNEYHHWIKEELDKIVAYELKTGGVLLHPIFGG
GKEKDNPASHLHFSIKHPHTLSWEYYTMFQCKAHLVMRLIENRISMEFMLQVFNKLLSLA
STASSQKFQSHMWSQMLVSTSGFLKSISNVSGKDIQPLIKQWVDQSGVVKFYGSFAFNRK
RNVLELEIKQDYTSPGTQKYVGPLKVTVQELDGSFNHTLQIEENSLKHDIPCHSKSRRNK
KKKIPLMNGEEVDMDLSAMDADSPLLWIRIDPDMSVLRKVEFEQADFMWQYQLRYERDVV
AQQESILALEKFPTPASRLALTDILEQEQCFYRVRMSACFCLAKIANSMVSTWTGPPAMK
SLFTRMFCCKTCPNIVKTNNFMSFQSYFLQKTMPVAMALLRDVHNLCPKEVLTFILDLIK
YNDNRKNKFSDNYYRAEMIDALANSVTPAVSVNNEVRTLDNLNPDVRLILEEITRFLNME
KLLPSYRHTITVSCLRAIRVLQKNGHVPSDPALFKSYAEYGHFVDIRIAALEAVVDYTKV
DRSYEELQWLLNMIQNDPVPYVRHKILNMLTKNPPFTKNMESPLCNEALVDQLWKLMNSG
TSHDWRLRCGAVDLYFTLFGLSRPSCLPLPELGLVLNLKEKKAVLNPTIIPEAVAGNQEA
ASNPSSHAQLVGFQNPFSNSQDEEEIDMDTVHDSQAFISHHLNMLERPSTPGLSKYRPAS
SRSALMPQHSSGCDSTAATKPQWSMELTRKGAGKEQSPLEMSMHPVATAPLSVFTKESTS
SKHSDHHHHEHKKKKKKHKHKHKHKHKHDSKEKDKDPFTYSSPASGRSARSPLFQTEKGT
KSPFPLCPEECI
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgccttcgaccggtgccgagcccttcagaatgaacaggaagaaaggagacaagggcttt
gaaagcccaaggccgtataaattaacccatcaggttgtctgcatcaacaacataaatttc
cagaggaagtctgttgtgggctttgtggaactgactatatttcctacagttgcaaacttg
aatagaatcaagttgaacagcaaacagtgtagaatatatcgagtaaggatcaatgattta
gaggctgcttttatttataatgatccaaccttagaagtttgtcacaatgaatcaaaacag
aggaatctcaattatttttccaatgcatatgcagctgcagttagtgccgtggatcctgat
gcaggaaatggagaactttgcattaaagttccatcagagttatggaagcatgttgatgag
ttaaaggttctgaagatacacattaatttttctttggatcagccaaaaggaggtcttcat
tttgtggtgcccagtgtagaggggagtatggcagagagaggtgctcatgtcttctcttgt
gggtatcagaattccacaagattttggttcccatgtgttgattcatactctgaattatgt
acatggaaattagaatttacagtagatgctgctatggtggctgtttccaatggagatttg
gtagagacagtatatacccatgatatgaggaagaagaccttccattacatgcttaccatt
cctacagcagcatcaaacatctccttggccattggaccttttgaaatactcgtagatcca
tatatgcatgaggttactcatttttgtttaccccaacttcttccattgcttaaacatacc
acatcatatcttcatgaagtctttgaattttatgaagaaattcttacatgtcgatatcca
tattcctgttttaagactgtattcattgacgaggcttatgttgaagtggctgcttatgct
tccatgagcatttttagcacaaatcttctacacagtgccatgattatagatgagacacct
ttgactagaaggtgtttagcccagtccttggcccagcagttttttggatgttttatatcc
agaatgtcctggtctgatgaatgggtgctgaagggaatttcaggatatatttatggactt
tggatgaagaagacttttggtgttaatgagtaccaccattggattaaagaggagctagat
aaaatagtggcatatgaactgaaaactgggggagttttactacatcccatatttggtgga
ggaaaagagaaggataatccagcatcccacctacacttttcaataaagcatccacataca
ctctcctgggaatactacactatgtttcagtgtaaagcccaccttgtgatgagattgatt
gaaaatagaatcagcatggaatttatgctacaagttttcaataaattactaagcctggct
agtactgcttcatctcagaagttccagtcacacatgtggagtcagatgttggtttccaca
tctgggtttttgaaatccatttcaaatgtctctggcaaagacatccagcccttaataaag
cagtgggtagaccaaagtggagtggtaaaattttatggaagttttgcatttaatagaaaa
cgaaatgtcttagagttggaaataaaacaagattatacatctcctggaactcagaagtat
gtgggaccacttaaagtgacagtacaggaattagatggatccttcaatcatacattgcaa
attgaagaaaacagccttaaacatgatataccctgccattccaaaagcagaaggaataag
aagaaaaaaatcccactgatgaatggagaagaagttgacatggatctttctgcaatggat
gctgattcccctttgctgtggataaggatagacccagatatgtcagtattgagaaaggta
gaatttgagcaagctgattttatgtggcaatatcaactccgctatgagagagatgttgtc
gcacagcaggaatctatcttggctttggaaaaattccctactccagcatctcggcttgct
ctcactgacatattagaacaagagcagtgcttctaccgagtaaggatgtcagcttgcttc
tgccttgcaaagattgcaaattcaatggtgagcacgtggacaggaccaccagccatgaag
tcactctttactagaatgttttgttgtaaaacttgtccaaatattgtgaaaacaaacaac
ttcatgagctttcaaagttattttctacaaaagactatgccagttgcaatggctttatta
agggatgttcataacctttgtcccaaagaagtgttaacatttattttagacctaatcaag
tacaatgacaacaggaaaaataagttttcagataactattatcgtgcagaaatgattgat
gccctggccaactctgttacacctgcagtcagtgtgaataatgaagttagaactctggat
aacttaaatcctgatgtgcgactaattcttgaagaaatcaccaggtttttgaatatggaa
aaacttcttccaagttatagacataccatcactgtcagttgcttgagagccatacgggta
ctgcagaaaaatggacatgtgccaagcgatccagctctttttaagtcttatgctgaatat
ggtcactttgtggacatcaggatagcagctttggaagcagttgttgattatactaaagtg
gacaggagttatgaagaactgcagtggcttcttaatatgattcagaatgaccccgtaccc
tatgtgaggcataagattctaaatatgctgactaagaatccaccatttacaaagaacatg
gaatctccattgtgcaatgaagccctggtagatcagctttggaaacttatgaattctggt
acttcacatgactggaggttgcggtgtggtgctgtggacttgtatttcacactttttggc
ctcagtagaccttcctgtttacccttaccagagcttgggttggttcttaatctgaaggag
aaaaaagctgtcttgaatcctactataattccagaggctgtagcaggcaaccaagaagct
gcgagcaatccaagcagtcatgcacagctagttggatttcaaaatcctttttcaaattct
caagatgaagaggagattgatatggatactgttcatgatagtcaggccttcatctcccat
catctgaacatgcttgaaagaccatcaactccaggactctccaaatatcgaccagctagc
tctcgttctgctttaatgcctcaacattcatcaggttgcgatagcacagctgccacgaaa
ccccagtggagtatggaacttacacgtaagggagcaggtaaagaacaatcgcctttggag
atgagtatgcatccagtggcaacagctccactctcagtatttactaaggaatctacatcc
tccaaacacagtgaccaccatcaccatgagcataagaaaaagaagaagaagcacaaacat
aagcacaaacacaagcataagcatgacagcaaagaaaaggacaaggatcctttcacttac
tccagccctgccagtggcaggtctgctcgttctcctctctttcagactgaaaaagggaca
aagagccctttccctctgtgtccagaagaatgcatataa
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