Sciurus carolinensis (gray squirrel): 124962055
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Entry
124962055 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: bifunctional glutamate/proline--tRNA ligase-like
KO
K14163
bifunctional glutamyl/prolyl-tRNA synthetase [EC:
6.1.1.17
6.1.1.15
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar00860
Porphyrin metabolism
ncar00970
Aminoacyl-tRNA biosynthesis
ncar01100
Metabolic pathways
ncar01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00860 Porphyrin metabolism
124962055
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
124962055
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
ncar01007
]
124962055
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ncar03016
]
124962055
Enzymes [BR:
ncar01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.15 proline---tRNA ligase
124962055
6.1.1.17 glutamate---tRNA ligase
124962055
Amino acid related enzymes [BR:
ncar01007
]
Aminoacyl-tRNA synthetase
Class I (A)
124962055
Transfer RNA biogenesis [BR:
ncar03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
124962055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1c
WHEP-TRS
HGTP_anticodon
tRNA-synt_2b
ProRS-C_1
tRNA-synt_1c_C
tRNA-synt_1c_C2
Arc1p_N_like
GST_C
tRNA-synt_1e
GST_C_3
Motif
Other DBs
NCBI-GeneID:
124962055
NCBI-ProteinID:
XP_047377115
LinkDB
All DBs
Position
12:65402330..65476373
Genome browser
AA seq
1512 aa
AA seq
DB search
MATLCLTVNSGDPPLEALLAVEHVKGDVSISVEEGKENILRVSENVVFTDINSILRYLAR
VATTSGLYGTNLMEHTEVDHWLEFSATKLCSCSLFTSAINELNHCLSLRTYLVGNSMTLA
DLCVWATLKGNAAWQEQLKQNKTPVHVKRWFGFLEAQQAFQSVGTKWDVSPNKTRVASEK
KQDVGKFIELPGVEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTN
PEKEKEDFEKVILEDVALLHIKPDQFTYTSDHFETIMKYAEKLIQEGKAYVDDTPAEQMK
AEREQRIESKHRKNSVEKNLQMWEEMKKGSQFGQSCCLRAKIDMSSNNGCMRDPTLYRCK
IQPHPRTGNKYNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIRKPYI
WEYSRLNLNNTVLSKRKLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGS
SRSVVNMEWDKIWAFNKKVIDPVAPRYVALLKKEVIPVKVLEAQEEMKEVAKHPKNPDVG
LKPVWYSPKVFIEGADAETFSEGEMVTFINWGNIIITKIHKNADGKIVSLDAKLNLENKD
YKKTTKITWLAETTHALPIPAICVTYEHLITKPVLGKDEDFKQYVNKNSKHEELMLGDPC
LKDLKKGDIIQLQRRGFFICDQPYEPVSPYSCKEAPCILIYIPDGHTKEMPTFGSKEKAK
VETTKNETTAPLKERPAPSLNXTCVMSEDSLILYNRVAVQGDVVRELKAKKAAKDDIDAA
VKQLLALKAEFKEKTGQEYKPGNPPATLVQSISSKSPAKYLESKSLYDKVAAQGEXVRKL
KAEKAPKTKVNEAVECLLSLKAEYKEKTGKDYLPGQPPSSQXSDSNPIRNSNXVGPETPE
AKVLFDKVASQGEVVRKLKAEKVSKDQIDTAVQELLQLKAQYKSLTGVEYKPVSATGAED
KDKKKKEKENKSEKQNKPSKQNDGQGKDSNKTQGSGLSSSXAGEGQGPKKQTRVGLEAKK
EENLADWYSQVITKSEMIEYYDISGCYILRPWSYSIWEFIKDFFDAEIKKLVLKNCYFPI
FVSQGALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDL
PIRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATFEEAAEEVLQILELYAQVYEEL
LAIPVVRGRKTEKEKFAGGDYTTTIEAFISASGRAIQGATSHHLGQNFSKMCEIVFEDPK
TPGEKQFAYQCSWGLTTRTIGVMIMVHGDNMGLILPPRVACVQVVVIPCGITNALSEEDK
EALIAKCNDYQKRLRSVNIRVRVDLRDNYSPXWKFNHWELKGVPIRLEVGPRDMKSCQFV
AVRRDTGEKLTVAENEAETKLQAILEDIQVNLFTRASEDLKTHMVVANTLEDLQKVLDSG
KIAQIPFCGEIDCEDWIKKTTARDQDLEPGAPSMGAKSLCIPFKPLCELQPGAKCVCGKN
LAKFYTLFGRSY
NT seq
4539 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgctctgtctcaccgtgaattcaggagatccccccctggaagctttgctggcg
gtagaacatgtgaaaggtgatgtcagcatttctgttgaagaagggaaagaaaatattctt
cgtgtttctgaaaatgtggtattcacagacataaattccatacttcgctacttggctaga
gttgcaactacatctgggctctatggcactaatctgatggagcatactgaggttgatcac
tggttggaatttagtgctacaaaattgtgttcatgcagtttgttcacttctgcaatcaat
gagctcaatcattgcctgtctctgagaacatacttagttggaaattccatgaccttagca
gatttatgtgtttgggctactctaaaaggaaacgctgcatggcaggaacaattgaaacag
aataaaactccagttcatgtaaaacgctggtttggctttcttgaagcccagcaggccttc
cagtcagtaggtaccaagtgggatgtttctccaaacaaaactagagtggcatctgagaaa
aaacaagatgttgggaaatttattgagcttcctggtgtggagatgggaaaggttactgtc
aggtttcctccagaggctagtggttacttacacattgggcatgcaaaagctgctcttctg
aaccagcactaccaggttaactttaaagggaaactgatcatgagatttgatgacacaaat
cctgaaaaagaaaaggaagattttgagaaggttatcttggaagatgttgcattgttacat
atcaaaccagatcaatttacttatacctcagatcattttgaaactataatgaaatatgca
gagaagctaattcaagaagggaaggcttatgtggatgatactcctgctgagcagatgaaa
gcagaacgtgaacagaggatagagtccaaacatagaaaaaactctgttgagaagaatcta
caaatgtgggaagaaatgaaaaaagggagccagtttggtcagtcctgttgtttacgagca
aaaattgacatgagtagtaacaatggttgcatgagggacccaactctttatcgctgcaaa
attcaaccacatccaagaactgggaataaatacaatgtttatcctacatatgattttgcc
tgccccatagttgacagcattgaaggtgttacacatgccctgagaacaacagaatatcat
gacagagatgagcagttttattggattattgaagctttaggaataagaaagccatatatt
tgggaatatagtagactaaatcttaacaacacagtgctgtctaaaagaaaacttacgtgg
tttgtcaacgaaggactggttgatggatgggatgacccaagatttcctacagttcgaggt
gtactgagaagagggatgacagttgaaggactgaaacagtttattgctgctcagggctcc
tcacgttcagttgtaaacatggaatgggacaaaatctgggcctttaacaaaaaggttatt
gacccagtggctccacgatacgttgcattattgaagaaagaagtgattccagtgaaggtt
cttgaagctcaggaggagatgaaagaagtagcaaaacatccaaagaatcctgatgttggc
ttgaagcctgtgtggtatagccccaaagtgttcattgaaggtgctgatgcagagactttt
tcagagggtgagatggttacatttataaattggggcaacatcatcattactaaaatacac
aaaaatgcagatggaaaaattgtatctcttgatgcaaaattgaatttggagaacaaagac
tacaagaagactaccaagatcacttggcttgctgaaactacacatgctcttccaattcca
gcaatctgtgtcacttatgagcacttgatcacgaagccagtgctaggaaaagatgaggat
tttaagcagtatgtcaacaagaacagtaagcatgaagaactaatgctaggtgatccttgc
cttaaggatttgaaaaaaggagatattatacaactccagagaagaggattcttcatatgt
gatcagccttatgagcctgtgagcccatacagttgcaaagaagccccatgcattttgata
tacattcctgatggacatacaaaggaaatgccaacatttggatcaaaggaaaaggccaaa
gtagaaaccacaaaaaatgagacaactgctcctcttaaggaaagaccagcaccttctctg
aatnatacttgtgtcatgtctgaagattccttgatcctttacaacagggtggctgttcaa
ggggatgtcgtgcgtgaattaaaagccaagaaagcagcaaaggacgatatagatgcagct
gtaaaacaacttttagctttgaaagctgaatttaaagagaaaactggtcaggaatataaa
cctgggaatcctcctgctacattagtacagagtatttcttctaaatccccagcaaaatat
ttggaaagtaaatctctatatgataaagttgctgcacaaggtgaangtgttcgaaagcta
aaagctgagaaagcccctaagactaaagtaaatgaagctgtagaatgcttactctcccta
aaagctgagtataaagaaaaaactgggaaggattacttacctggtcaacccccatcttct
caangttcagattcaaatcctattagaaactccaatnatgttggtccagaaacaccagaa
gccaaagtgctttttgacaaagtagcttctcaaggggaagtagttcgaaaacttaaagct
gaaaaagtttctaaagatcaaattgatacagctgtacaagaactccttcagctgaaagca
cagtacaagtctctgacaggagtagagtataaacctgtgtctgccactggggctgaggac
aaagataagaagaagaaagagaaagaaaataaatctgaaaagcagaataaaccttcaaaa
caaaatgatggccaagggaaagactctaataaaacccaagggagtgggctgtcatcaagt
ngagcaggagaagggcaagggcctaagaaacagaccagggttggtcttgaagccaaaaaa
gaagaaaatcttgctgattggtattctcaggtcatcacaaaatcagaaatgattgaatac
tatgatataagtggctgctatattcttcgtccctggtcatattccatttgggaattcatc
aaggacttttttgatgctgagatcaagaaacttgtgttgaaaaactgctatttccccata
tttgtgtctcaaggtgccttagagaaagagaagactcatgttgctgattttgcccctgag
gttgcttgggttacaagatctggcaaaacagagttagcagaaccaattgccattcgtcct
actagtgaaacagtaatgtatcctgcatatgcaaaatgggtgcagtcacacagagacctg
cccatcaggctcaatcagtggtgcaatgtggtgcgttgggagttcaagcacccacagcct
ttccttcgtactcgtgaattcctttggcaagaaggacacagtgcttttgctaccttcgaa
gaagcagcagaagaggtcttgcagatacttgaattatatgctcaggtatatgaagaactc
ctggcaattcctgttgtaagaggaagaaagactgaaaaggagaagtttgcaggaggagac
tatacaactacaatagaagcatttatatctgctagtggaagagctattcagggagcaacg
tcacatcatttaggccagaatttttccaaaatgtgtgaaatcgtttttgaagatccaaag
acaccaggagagaagcaatttgcctatcagtgctcctggggcttgacaactcgaactatt
ggtgttatgatcatggttcatggggacaacatgggcttaatattaccaccccgtgtagcc
tgtgttcaggtggtggttattccctgtggtattacaaatgcactttctgaagaagacaaa
gaagcactaattgcaaaatgcaatgattaccaaaagcggttacgcagtgttaacattcgt
gttagagttgatttgcgagataactattctccgngttggaaatttaatcactgggagctc
aagggagttccaattagacttgaagttgggccacgtgatatgaaaagctgccagtttgta
gctgtcagacgggatactggagaaaagctgacagttgctgaaaatgaggctgagactaaa
cttcaagctattttagaagacatccaagttaaccttttcacaagggcttctgaagacctt
aaaactcatatggttgtggctaatacattggaagacttacagaaagtactggattctgga
aagattgctcagattccgttctgtggggaaattgactgtgaagactggatcaaaaagacc
acggccagggatcaggatctggaacctggtgctccctccatgggagctaaaagcctttgt
atccctttcaaaccactctgtgagctgcagcctggagccaaatgcgtctgtggcaagaac
cttgccaagttctacaccttgtttggtcggagttactaa
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