Sciurus carolinensis (gray squirrel): 124962160
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Entry
124962160 CDS
T08117
Name
(RefSeq) LIM homeobox transcription factor 1-alpha isoform X1
KO
K09371
LIM homeobox transcription factor 1
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncar03000
]
124962160
Transcription factors [BR:
ncar03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain LIM
124962160
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LIM
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
124962160
NCBI-ProteinID:
XP_047377283
EnsemblRapid:
ENSSCRG00010020970
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Position
12:116821914..116953397
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AA seq
383 aa
AA seq
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MLDGLKMEENFQSAIESSASFSSLLGRAVSPKSVCEGCQRVISDRFLLRLNDSFWHEQCV
QCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCF
CCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVSPAASDSGKSDEEESLCKSAPG
AGKGASEDGKDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQ
VWFQNQRAKMKKLARRQQQQQQDQQNTQRLSSAAQTNGSGSAGMDGIMNPYTALPTPQQL
LAIEQSVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDDTSLSNLGDCFLATSESG
PLQSRVGNPIDHLYSMQNSYFTS
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atgctggacggcctgaagatggaggagaatttccaaagcgcaatcgagtcttccgcctcc
ttctcctcgctgctaggcagagcggtgagtcccaagtcggtctgcgaaggctgtcagcgg
gtcatctcggaccggtttctgctgcggctcaacgacagcttctggcatgagcagtgcgtg
cagtgcgcctcctgcaaagagcccctggagaccacctgcttctaccgggacaagaagctc
tactgcaagtacgactacgagaagctgttcgctgtcaaatgcgggggctgctttgaggcc
atcgcccccaacgagtttgtaatgcgggcccagaagagcgtgtaccacctgagctgcttc
tgctgctgcgtctgcgagcggcagcttcagaagggtgacgagttcgtcctgaaggagggg
cagctgctgtgcaaaggggactatgagaaggagcgggagctgctcagcctggtgagcccc
gcagcctccgactcaggcaaaagcgacgaggaggagagcctttgcaagtcggctccaggg
gcggggaagggagcctctgaggatggcaaggaccacaagcgccccaaacgccccagaacc
atcctgaccacccagcagaggagagcattcaaggcctcgtttgaagtgtcctccaagccc
tgcaggaaggtgagggagacgctggccgcagagaccgggctgagcgtccgtgtggtgcag
gtgtggttccagaaccagagagctaagatgaagaagctggccaggcggcagcagcagcag
cagcaggaccagcagaacacgcagaggctgagctctgcagctcagacgaacggcagcggg
agtgcaggcatggacggaatcatgaacccctacacggctctgcccacccctcagcagctc
ctggccatcgagcagagcgtctacagctctgaccccttccggcagggcctcaccccgccc
cagatgcctggcgaccacatgcatccttacggtgctgagcccctgttccatgacctggat
agtgacgatacttcccttagtaacctgggtgactgtttcctagcaacctcagaatccggg
cccctgcagtccagagtgggcaaccccattgaccacctgtactcgatgcagaattcatac
ttcacctcttga
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