Sciurus carolinensis (gray squirrel): 124962289
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Entry
124962289 CDS
T08117
Name
(RefSeq) partitioning defective 3 homolog isoform X1
KO
K04237
partitioning defective protein 3
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04015
Rap1 signaling pathway
ncar04062
Chemokine signaling pathway
ncar04144
Endocytosis
ncar04360
Axon guidance
ncar04390
Hippo signaling pathway
ncar04520
Adherens junction
ncar04530
Tight junction
ncar05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04015 Rap1 signaling pathway
124962289
04390 Hippo signaling pathway
124962289
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
124962289
09144 Cellular community - eukaryotes
04520 Adherens junction
124962289
04530 Tight junction
124962289
09150 Organismal Systems
09151 Immune system
04062 Chemokine signaling pathway
124962289
09158 Development and regeneration
04360 Axon guidance
124962289
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
124962289
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ncar01009
]
124962289
Protein phosphatases and associated proteins [BR:
ncar01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124962289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
Par3_HAL_N_term
PDZ_6
Motif
Other DBs
NCBI-GeneID:
124962289
NCBI-ProteinID:
XP_047377463
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Position
12:42021579..42671290
Genome browser
AA seq
1358 aa
AA seq
DB search
MMWCCGTLARTPRSVGCAGFQYRGHKVLLDDCLPRLPKRKSEDPNYWIQVHRLEHGDGGI
LDLDDILCDVADDKDRLVAVFDEQDPHHGGDGTSASSTGTQSPEVFGSELGTNSVSAFQP
YQATSEIEVTPSVLRANMPLHVRRSSDPALIGLSTSVSDNNFSSEEPSRKNPTRWSTTAG
FLKQNTAGSPKACDRKKDENYRSLPRDTSNWSNHFQRDNARSSLSASHPMVDKWLEKQEQ
DEDGTEEDSSRVEPVGHADTGLENIPSFSLDDMVKLVQVPNDGGPLGIHVVPFSARGGRT
LGLLVKRLEKGGKAEQENLFHENDCIVRINDGDLRNRRFEQAQHMFRQAMRTPIIWFHVV
PAANKEQYEQLSQSEKNNYYSSRFSPDSQYIDNRSVNSAGPHALQRAPRLSHPPEQIEAH
PRLPHSAHPSTKPPSAPALASQNVFSSSASSGYNTKKVGKRLNIQLKKGTEGLGFSITSR
DVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEG
TVSLLVFRQEDAFHPRELNAEPSQMQIPKETKAEDEDIVLTPDGTREFLTFEVPLNDSGS
AGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKTNQDA
METLRRSMSTEGNKRGMIQLIVARRISKCNELKSPGSPPGPELPIETVLDDRERRISHSL
YSGIEGLDESPTRNAALSRIMGESGKYQLSPTVNMPQDDTVIIEDDRLPMLPPHLSDQSS
SSSHDDVGFMMTDAGTWAKAAISDSADCSLSPDVDPVLAFQREGFGRQSMSEKRTKQFSD
ASQLDFVKTRKSKSMDLGIADETKLNTVDDQKAGSPSRDVGPSLGLKKSSSLESLQTAVA
EVTLNGDIPFHRPRPRIIRGRGCNESFRAAIDKSYDKPAIDDDDEGMETLEEDTEESSRS
GRESVSTASDQPSHSLERQMNGNQEKGDKTDRKKDKTGKEKKKDREKEKDKMKAKKGMLK
GLGDMFRFGKHRKDDKIEKTGKIKIQDSFTSEEERIRMKQEQERIQAKTREFRERQARER
DYAEIQDFHRAFGCDDELMYGGMSSYEGSLALNTRPQSPREGHLMDALYAQVKKPRNSKP
SPVDSNRSTPSNHDRIQRLRQEFQQAKQDEDVEDRRRTYSFEQPWPSSRPAAQSGRHSVS
VEVQAQRQRQEERESFQQAQRQYSSLPRQSRKNASSVSQDSWEQNYPPGEGFQSAKENPR
YSSYQGSRNGYLGGHGFNARVMLETQELLRQEQRRKEQQMKKQPPPEGPSNYDSYKKVQD
PNYAPPKGPFRQDVPPSPSQVARLNRLQTPEKGRPFYS
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atgatgtggtgctgtgggactctagcccggaccccacgcagtgtgggctgtgctgggttt
cagtacaggggtcacaaggtactactggatgactgtttgcccaggcttccaaagaggaaa
tcagaggatccaaactactggatacaggtgcatcgcttggaacatggagatggaggaatt
ctagacctggatgacatcctctgtgatgtagcagatgataaagacagactggtagcggtg
tttgatgaacaagatccgcatcatggaggcgatggtaccagtgccagttccacaggtacc
cagagtccagaggtgtttggtagtgagcttggtaccaacagtgtttcagcctttcagcct
taccaagcaacaagtgaaattgaggttacaccttcagtcctccgggcaaatatgcctctt
cacgtccgacgaagcagtgacccagctttaattggcctctcaacttctgtcagtgataat
aatttttcttctgaagagccctcaaggaaaaaccctacacgctggtcaacaacagctggc
ttcctcaaacagaacactgctggtagtcccaaagcctgtgacaggaagaaagatgaaaac
tacagaagccttccacgggatactagtaactggtctaatcattttcagagagacaatgct
cgctcatctctcagtgccagtcacccaatggtggacaagtggttggagaagcaagaacag
gacgaggatgggacagaagaagatagtagccgcgtggaaccggttggacatgctgacact
ggtttagagaatatacccagcttttctctggatgatatggtaaagctcgtacaagtcccc
aacgatggagggcctctgggaatccatgtagtgcctttcagtgctcgaggcggcagaacc
ctggggttattagtaaaacgattggagaaaggtggtaaagctgaacaagaaaaccttttt
catgagaatgattgcattgtcaggattaatgatggtgaccttcggaatagaagatttgaa
caagcacaacatatgtttcgccaagccatgcgtacacccatcatttggttccatgtggtt
cctgcagcaaataaagagcagtatgaacaactatcccaaagtgagaagaacaattactat
tcaagccgcttcagccctgacagccagtatattgataacaggagtgtgaacagtgctggg
cctcatgcactgcaaagagcacccagactgagccacccacccgagcagatagaagctcac
ccacgactacctcatagtgcacacccctccacaaaaccaccatcagccccagctctggcc
tcacagaatgtatttagttcaagtgcaagcagtggttataacaccaaaaaagtaggcaag
aggctcaatatccagctgaagaaaggtacagaaggtttgggatttagcatcacttcacga
gatgtaacaataggtggttcagctccaatttatgtgaaaaacatcctccctcgaggggct
gccattcaagatggtagactgaaggcaggagatagactcatagaggtaaatggagtagac
ttagcaggcaaatcccaagaggaagttgtttccctgttaagaagcaccaagatggaaggg
actgtgagccttctggtctttcgccaggaagatgcctttcacccaagggaactgaatgca
gagccaagccagatgcagattccaaaagaaacgaaagcagaagatgaagatattgttctc
acacctgatggcaccagggaatttctgacatttgaagttccacttaatgattcaggatct
gctggtcttggtgtcagtgtcaaaggtaaccggtccaaagagaaccatgcagatttggga
atcttcgtcaagtctattattaatggaggagcagcatctaaagatggaaggctgcgggtg
aatgaccaactgatagcagtaaatggagaatccctgttgggcaagacaaaccaagatgcc
atggaaaccctaagaaggtctatgtccactgaaggaaataaacgaggaatgatccagctt
attgtggcgcggcgaataagcaagtgcaatgagctaaagtcacctgggagcccccctgga
cctgagctgcccattgaaacagtattggatgatagagaacgaagaatttcccattccctc
tacagtggaattgagggacttgatgaatcacccacaagaaatgctgcactcagtaggata
atgggtgagtcaggtaaataccagctgtcccctactgtgaatatgccccaagatgacact
gtcattatagaagatgacaggttgcccatgcttcctccacatctctctgaccagtcctct
tccagctcccatgatgatgtgggattcatgatgacagatgctggcacatgggctaaggct
gcaatcagtgattcagccgactgctctttgagtccagatgttgatccagtacttgctttt
caacgggaaggatttggacgccagagtatgtcagaaaaacgcacaaagcaattttcagat
gccagtcaattggatttcgttaaaacgagaaaatcaaaaagcatggatttaggtatagct
gacgagactaaactcaatacagtggatgaccagaaagcaggctcccccagcagggatgta
ggaccttccctgggtctcaagaagtcaagctcactggagagtctgcagacagcagtagct
gaggtgacgttgaatggggatattcctttccatcgcccacggccacgcataatccgagga
agggggtgcaatgagagcttcagagctgctattgacaagtcttatgataaacctgccata
gatgatgatgatgaaggcatggagacattggaagaagacacagaagaaagttcacgatca
gggagagaatctgtatccacagccagtgatcagccttctcactctctggagagacaaatg
aatgggaaccaagagaaaggggacaagactgataggaaaaaagacaaaactggaaaagag
aagaaaaaagatagagaaaaggaaaaggataaaatgaaagccaagaagggaatgctgaag
ggtttgggagacatgttcaggtttggcaaacatcgaaaagatgacaagattgagaaaacg
ggtaaaataaaaatacaggactcctttacatcagaagaggagagaatacgaatgaagcag
gagcaggagaggattcaagccaaaactcgagaatttagggagcgacaggctcgagaacgt
gactatgctgaaatccaagattttcatcgtgcattcggctgtgacgatgagttgatgtat
gggggaatgtcttcttatgagggttccctggctctcaacactagaccccagagcccaaga
gaagggcatttgatggatgctttgtatgctcaagtgaagaagccgcggaattccaaacct
tcacctgtagacagcaaccgatcaactcctagcaaccacgatcggatacagcgtctgcgg
caagagtttcagcaggcgaagcaggacgaagatgtggaagatcggcgacgcacctatagc
tttgaacaaccatggcccagctcccggccagcagcacagagcggcaggcactcggtgtcc
gtagaggtgcaggcacagcggcagcggcaagaagaacgtgagagcttccagcaggcccag
cgccagtacagttccctgcctcggcaaagcaggaagaacgccagttccgtctcccaggat
tcctgggagcagaactacccacctggtgaaggtttccagagtgccaaggagaaccccagg
tactccagctatcaaggctccagaaatggctacctgggagggcacggcttcaatgccagg
gtcatgctggagacccaggagctcctccgccaggagcagcggcggaaagaacagcagatg
aagaagcagcctcctcctgagggacccagcaactatgactcatataagaaagtccaggac
cccaattacgcccctcctaagggacccttccggcaagatgtgcccccatccccttctcag
gtcgccagactgaacagactccaaactcctgagaaggggcggcccttctattcctga
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integrated database retrieval system
