Sciurus carolinensis (gray squirrel): 124962306
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Entry
124962306 CDS
T08117
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit A
KO
K15212
TATA box-binding protein-associated factor RNA polymerase I subunit A
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncar03021
]
124962306
Transcription machinery [BR:
ncar03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
124962306
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TAF1_subA
COG4_N
RIC1
Motif
Other DBs
NCBI-GeneID:
124962306
NCBI-ProteinID:
XP_047377498
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Position
12:63138033..63166637
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AA seq
450 aa
AA seq
DB search
MSDFSEEVTKPVSEDDQVETSVLTGTGMYFPWLQKHLETVVTGGKKKKDFAQTTSACLNF
IQEALLKHQWQQAAEYMHSYLQILEDSDSYKRQAAPEVIWRLGSEILFYHPKSNVETFSA
FADRMKNIGVLNYLKISLQHALYLLHHGLLEDANRNLSQAETWRYGEKSSSQEILINLVQ
AYKGLLQYYTWCKKKTELSKLDEDDYAYSTATQNMLSESWKTSVNICALIKTPGVWDPFV
KSYVEMLEFCGDQDEARKILTNYAYDEKFPSNPNAHIYLYNFLKREKAPRAKLLNVLKIL
YQIVPSHKLMLEFHLLLRKSEKEEHRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLRQLL
MENHLVWVQEEWNSRKNWWPTFHFSYFWAKSDWKEDTDLACEKAFVAGILLGKGCRYFRY
ILKQDHQVLRKKIKRMKKSVKKYSIVNPRV
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatttcagtgaagaagtgaccaagcccgtttcagaggatgaccaggtggaaaca
tctgtgctcactggtacaggaatgtattttccttggcttcaaaagcatttagaaactgta
gtgactggagggaaaaagaagaaggattttgctcagacaacaagtgcttgtttaaatttt
atccaagaagctctgctgaagcaccagtggcagcaagctgcagaatacatgcacagctat
ttgcagatcttggaagattcagacagctacaaaaggcaggctgcacctgaggttatttgg
aggcttggaagtgaaattctcttttatcaccccaaaagcaatgtggagactttcagtgcc
tttgctgatcggatgaaaaatattggcgtcctgaattatttgaagatctccttacaacat
gcattgtaccttctgcatcatggattgcttgaggatgcaaacagaaatctaagtcaggca
gagacatggagatatggtgaaaaatcatcttcccaggaaatattaatcaatcttgttcag
gcctacaaaggacttttgcagtattatacatggtgtaaaaagaaaacggaattgtcaaag
cttgatgaggatgattatgcatacagcacagcaacccaaaatatgctcagtgagagctgg
aagacatctgtaaatatttgtgcattgattaaaactcctggagtttgggacccttttgtg
aaaagttatgtagagatgctggaattctgtggtgatcaagatgaggcccgaaagatactc
actaattatgcttatgatgaaaagttcccatcaaatccgaatgcccatatatacttatac
aattttctaaagagagaaaaggcacctagagcgaaactgttaaacgtgcttaagattttg
tatcagattgtaccctctcataaactgatgctagaattccatttgttacttagaaaatca
gaaaaagaagagcaccgtaaattggggttggaagtattatttggagtcttggattttgct
ggatgcacgaagaacataactgcatggaaatacttggctaaatatttgagacagctctta
atggagaatcatcttgtgtgggttcaagaagagtggaactccaggaaaaactggtggcca
acttttcacttcagctacttttgggcaaaaagtgattggaaggaagatacagatttggct
tgtgagaaagcttttgtagctggaatactgttaggaaaaggttgtaggtattttcgatat
attttaaaacaagatcatcaagtgttacggaagaaaattaagcgaatgaagaaatcagtg
aaaaaatacagtattgtaaatccaagagtctga
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