Sciurus carolinensis (gray squirrel): 124962801
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Entry
124962801 CDS
T08117
Name
(RefSeq) structural maintenance of chromosomes protein 6 isoform X1
KO
K22804
structural maintenance of chromosomes protein 6
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncar03400
]
124962801
DNA repair and recombination proteins [BR:
ncar03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
124962801
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
TPR_MLP1_2
AAA_29
DUF3993
AAA_21
AAA_15
Motif
Other DBs
NCBI-GeneID:
124962801
NCBI-ProteinID:
XP_047378027
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Position
13:81325766..81394972
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AA seq
1095 aa
AA seq
DB search
MAKRKEENFFSPENAKRPRQEELEDFDKDGDEDECTVSFTNGTSTLTAAEVGIIESIHLR
NFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGKAVATNRGSSLKGFVKDGQ
NSADITITLRNRGDDAYRANVYGDSIVVQQHISMDGSRSYKLKSETGAVVSTRKEELIAI
LDHFNIQVDNPVSILTQEMSKQFLQSKNEGDKYKFFMKATQLEQMKEDYSYIMETKERTK
EQINQGEERLTELKRQCLEKEERFQSIAGLSTMKTNLEYLKHEMAWAVVNEIEKQLNAIR
DNIKIGEDRAARLDRKMEEQQVRLNEAEKKYKDIQDKLEKISQETNARAPECMALKADVT
AKKRAYNEAEVLYNRSLNEYKALKKDDEQLCKRIEELKKSTDQSLEPERLERQKKICWLK
ERVKTLQDQENSINQEIEQFQQAIEKDKEEYTRIKGEELDVKHALTYNQRQLKELKDSKT
DRLKRFGSHVPALLEAIDEAYRRGHFTHKPIGPLGACIHLRDPEHALAIESCLKGLLQAY
CCHNHADERILQALMKRFYPPGTSRPQIIVSEFRNEMYDVRHRAAHHPEFPTVLTALEID
NAVVANSLIDMRGIETVLLIKNNSVARAVMQFQKPPKNCREAFTADGDQVFAGRYYSSEN
TRPKFLSRDVDSEISDLENEVENKKAQIINLQQHLSALEKDIKHNEDLLKRCQLHYKELK
MKIRKSISEIRELENIEEHQSVDIATLEDEAQENKIKMKMVEKNMEQQKENMEHHKSLKV
EAENKYDAIKLKINQLSELADPLKDELNLADAEVDNQKRGKRHYEEKQKEHLDTLNKKKR
ELDMKVKELEEKMSQARQICPERIEVKKSASILDKEINRLRQKIQAEHASHGDREEIMRQ
YQEARETYLDLDNKVRTLKRFIKLLEEIMTHRYKTYQQFRRCLTLRCKLYFDNLLSQRAY
CGKMNFDHKNETLTISVQPGEGNKAAFNDMRALSGGERSFSTVCFILSLWSIAESPFRCL
DEFDVYMDMVNRRIAMDMILKMADSQRFRQFILLTPQSMSSLPSSKLIRILRMSDPERGQ
TTLPFRPVTQEDDDN
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaagaaaggaagaaaatttcttttctcctgaaaatgccaaaagaccaagacaa
gaagaactggaggattttgataaagatggtgatgaagatgaatgtacagtttctttcacc
aatggtacctctactttgactgcagcagaagttggaataattgagagtattcatctaaga
aacttcatgtgccattcaatgcttggaccctttaaattcggttctaatgtcaactttgtt
gttggtaataatggaagtgggaagagtgcagtactcacagctctcatagttggtcttggt
ggaaaagctgtcgctactaatagaggatcctctttaaaaggttttgtgaaagatggacag
aactcagcagatatcacaataacattaaggaacagaggagatgacgcctatagagcaaat
gtgtatggtgactccatagttgtgcaacagcacatcagcatggatggaagtcgatcctat
aaactaaaaagtgaaacaggtgctgtggtttctacaaggaaagaagaactaattgcaatt
ctggatcattttaatatccaggtggataacccagtctctattttaacacaagagatgagt
aagcagttcttgcagtctaaaaatgagggagacaaatacaaattcttcatgaaagcaacc
caacttgaacaaatgaaagaagattattcatacattatggaaactaaagaaagaacaaag
gaacagataaatcaaggagaagagcggcttactgagctaaagcgccagtgtttggagaaa
gaagaacgctttcagagtattgctggcttaagtacaatgaagactaatttagaatatttg
aaacatgaaatggcttgggcagtggtcaacgaaattgaaaaacaattaaatgctatcaga
gataatatcaaaattggagaagatcgtgctgctagacttgataggaaaatggaagagcaa
caggtcagacttaatgaagcagagaaaaaatacaaggatattcaagataaactagaaaag
attagtcaggagacaaatgcacgagcaccagaatgtatggcattgaaagcagatgtcact
gctaagaaaagggcctataatgaagctgaggttttatataaccgttccttaaatgaatat
aaagcactaaagaaagatgatgagcagctgtgtaaaagaattgaagaactaaaaaaaagc
actgatcagtctttggaacctgagaggttggaaagacaaaaaaaaatatgttggttaaaa
gagagagtaaagaccttacaggatcaggaaaattcaatcaatcaagagattgaacagttt
caacaagccatagaaaaggacaaagaagaatataccagaattaagggagaagaacttgat
gtgaagcatgcactgacctataatcagaggcaactgaaagaactgaaagatagtaaaact
gatagactgaaaagatttggctctcatgttccagctcttttggaggcaattgatgaagct
tatagacggggacactttactcataaacctataggccctttaggagcatgtattcatctt
cgggaccctgagcatgctttggctattgaatcctgtttaaaaggacttctccaagcctat
tgttgccataaccatgctgatgaaagaatacttcaggcactgatgaaaaggttttatcca
ccagggacctcacggccacagataatagtttctgaatttcggaatgagatgtatgatgta
agacacagagctgctcatcatccagagttcccaactgttctgacagctttagaaatagat
aatgcagttgttgctaatagtctaatcgacatgaggggcatagagacagtgctgctaatc
aaaaataattctgtagctcgtgcagtaatgcagttccaaaagccacccaaaaattgtaga
gaagcttttactgctgatggtgatcaagtttttgcaggacgttattattcatctgaaaat
acacgacctaagtttctaagcagagacgtggattctgaaataagtgacttggaaaatgag
gttgaaaataagaaggcccagataataaatcttcagcagcatctgtctgcccttgaaaag
gatattaaacacaatgaagatcttcttaaaaggtgccaactacattataaagagttaaag
atgaaaataagaaaaagtatttctgaaattcgggaacttgagaatatagaagaacaccag
tctgtagatattgcaaccctggaagatgaggctcaagaaaataaaatcaaaatgaaaatg
gttgagaaaaacatggagcaacaaaaagaaaatatggagcatcataaaagtcttaaagtt
gaagcggaaaacaagtatgatgcaattaaactgaaaattaatcaactgtcagagctagca
gatccgcttaaggatgaattaaatcttgctgatgctgaagtggataaccaaaaacgaggg
aagcggcattatgaagaaaaacaaaaagaacacttggataccttaaataaaaagaaacga
gaactggacatgaaagtaaaggagctggaggagaaaatgtcacaagcaagacaaatctgc
ccagagcgaatagaagtaaaaaagtctgcatcaattctagacaaggaaattaatcgatta
agacaaaagatacaggcagaacatgctagtcatggagatcgagaggaaataatgaggcag
taccaggaagcaagggaaacataccttgatctggataataaagtaaggactttaaaaaga
tttattaaattactagaagaaataatgacccatagatacaaaacatatcaacagtttaga
aggtgtttgactttacggtgcaaattgtactttgacaacttattatctcagcgagcttat
tgtggaaaaatgaattttgaccataagaatgaaactcttactatatcagttcagcctgga
gagggaaataaagccgccttcaatgacatgcgagccttgtctggtggtgagcgttctttc
tctacggtgtgcttcattctttccctgtggtccatcgccgaatcacctttcagatgcctg
gatgagtttgatgtttacatggatatggttaacaggagaattgcaatggacatgatactt
aagatggcagattcccagcgttttagacaatttatcttgcttacccctcaaagcatgagc
tcacttccttcaagtaaactgattagaattcttcgaatgtctgatcctgaaagaggacaa
actacattgcctttccgacctgtgactcaagaagatgacgacaactga
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