KEGG   Sciurus carolinensis (gray squirrel): 124963084
Entry
124963084         CDS       T08117                                 
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
  KO
K08737  DNA mismatch repair protein MSH6
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar01524  Platinum drug resistance
ncar03430  Mismatch repair
ncar05200  Pathways in cancer
ncar05210  Colorectal cancer
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    124963084
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    124963084
  09162 Cancer: specific types
   05210 Colorectal cancer
    124963084
  09176 Drug resistance: antineoplastic
   01524 Platinum drug resistance
    124963084
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ncar03400]
    124963084
DNA repair and recombination proteins [BR:ncar03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     124963084
SSDB
Motif
Pfam: MutS_V MutS_III MutS_I PWWP MutS_IV MutS_II HORMA MUM1-like_PWWP
Other DBs
NCBI-GeneID: 124963084
NCBI-ProteinID: XP_047378495
LinkDB
Position
13:complement(55044882..55068318)
AA seq 1367 aa
MSRQSTLYSFFPKSPALSNANKAPTRASREGGGAATAATRASPSPGGDVARSEAAPGPGP
GHRPLGTSASPPEAKNLNGRLRRSAAPAVPASSSCDFSPGDLVWAKMEGYPWWPCLVYNH
PFDGTFIREKGKSVRVHVQFFDDSPTRGWVSKRLLKPYTGSKSKEAQKGGHFYSSKPEIL
RAMQRADEALNKDKVERLELAVCDEPSEPEEEEEMEVSATYASDKSEEDNEIESEEEVKP
KMEGSRRSSRQVKKRRVISDSESDIGGSDVEFKPDAKEEGSSDEISSGVGDSESEGLDSP
VKVAPKRKRMVTGSSAFKRKSSRKEMPSTTKRATGILSETKNTLSAFSAPQNSESQAHIS
GGSDDSSRPTIWYHETLEWLKKEKRRDDHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKW
WQIKSQNFDLVIFYKVGKFYELYHMDALIGVNELGLVFMKGNWAHSGFPEIAFGRYSDSL
VQKGYKVARVEQIETPEMMEARCRKMAHISKHDRVVKREICRIITKGTQTYSVLEGDPSE
NYSKYLLSLKEKEEDSSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQ
ILFEKGNLSVETKAILKGSLSSSLQEGLIPGSQFWDAAKTLRTLLEEGYFTEKLNEDSGV
MLPQVLKDMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLD
SDMVSTKSGAKFTKANQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERIDTCHTVFGKRLL
KQWLCAPLCSPFAINDRLDAIEDLMVVPDKISEVTDLLKKLPDLERLLSKIHNVGSPLKS
QNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIEIMEEVVDDFKSKILKQVITLQ
TKNPEGRFPDLTSELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEY
LEKQRNRIGCRTIVYWGIGRNRYQLEIPENFTTHNLPEEYELKSTKKGCKRYWTKTIEKK
LANLINAEERRDTSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLICLANYSQGADGPM
CRPVILLPGEDILPFLELKGSRHPCIMKTFFGDDFIPNDILIGCEEEEKENGKAYCVLVT
GPNMGGKSTLIRQAGLLAVMAQMGCYVPAEVCRLTPVDRVFTRLGASDRIMSGESTFFVE
LSETASILTHATAHSLVLMDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLV
EDYSKNVAVRLGHMACMVENECEDPSQETITFLYKFIEGACPKSYGFNAARLANLPEEVI
QKGHRKAREFEKMTQSLRLFREVCLASERSTLDAEALHKLLSLIKEL
NT seq 4104 nt   +upstreamnt  +downstreamnt
atgtcgcgacaaagcaccctatacagcttcttccccaagtctccagcgttgagtaatgcc
aacaaggccccaaccagggcctcacgcgaaggcggcggtgccgctactgcggccacccgg
gcctccccttctcctggcggggatgtggcccggagcgaggctgcgcctgggcctgggcct
gggcacaggcccttggggacctccgcgtctcctcctgaggcgaagaacctcaacggaagg
ctgcggaggtcggcagcgcccgcagtcccagccagcagttcttgtgacttctcaccaggt
gatttggtttgggctaagatggagggttacccctggtggccttgcctggtttacaaccac
ccctttgatggaacattcatccgtgagaaagggaaatcagtccgtgttcatgtacagttt
tttgatgacagcccaacaaggggctgggttagcaaaaggctgttaaagccatatacaggt
tcaaaatcaaaggaggcccagaagggaggtcatttttacagttcgaagcctgaaatactc
agagcaatgcaacgtgcagatgaagccttaaataaagacaaagttgagaggcttgaactg
gcagtttgtgatgagccctcagagccagaagaggaagaagagatggaggtaagtgcaact
tatgcatcagataagagtgaagaagataatgaaattgagagtgaagaggaagtgaagcct
aagatggaaggatctaggcgaagtagccgtcaagtaaaaaaacgaagggtcatatcagac
tctgagagtgacattggtggctctgatgtagaattcaaaccagatgctaaggaggaagga
agcagtgatgaaatcagcagtggagttggggatagtgagagcgaaggcctggacagccct
gtcaaagttgctccaaaacgtaagagaatggtgactggaagtagtgcttttaaaaggaaa
agttcaaggaaggaaatgccctcaaccaccaaacgagcaactggcatcttatcagaaacc
aaaaatactttgagtgctttctctgcccctcaaaattctgaatctcaagcccatattagt
ggagggagtgatgacagtagtcgtcccactatctggtatcatgaaactttagaatggctt
aagaaggaaaagagaagagatgatcataggaggcggcctgatcaccctgattttgatgca
tccacactctatgtgcctgaagatttccttaattcctgtactcctgggatgaggaagtgg
tggcagattaagtcccagaactttgatcttgtcatcttttataaggtggggaagttttac
gaactgtaccacatggatgctcttattggagtcaatgaattgggactggtattcatgaaa
ggcaactgggcccattctggttttcctgaaattgcatttggccggtactcagattccctg
gtgcagaagggctataaagtagcacgagtggaacagattgaaactcctgagatgatggag
gcccgatgccgaaagatggcacatatatctaagcatgacagagtggtaaagagagaaatt
tgtaggattattaccaagggtacacagacctacagtgtgctggaaggtgatccctctgag
aactacagtaagtatcttcttagcctcaaagaaaaagaggaagattcttctggccacaca
cgtgtatatggtgtgtgctttgttgatacttccctgggaaagtttttcataggtcagttt
tcagatgatcgtcattgttccagatttaggactctagtggcacactaccctccagtacaa
atcttgtttgagaaaggcaatctctcagtggaaactaaggcaatcctaaagggttcattg
tcctcttctcttcaggaaggtctgataccagggtctcaattttgggatgcagctaaaact
ttgagaactctccttgaagaaggctattttactgaaaaactgaatgaggacagtggggtg
atgttgccccaggtgcttaaagatatgacctcagagtctgattccattggattgacacca
ggagaaaaaagtgaattggctctctctgctctaggcggttgtgtcttctacctcaaaaaa
tgccttattgatcaggaacttttatccatggctaattttgaagaatatattcccttggat
tctgacatggtcagtacaaaatctggtgctaaatttactaaagccaatcaacgaatggtg
ctggatgcagtgacattaaacaacttggagattttcctgaatgggacaaatggttctact
gaagggaccctgctagaaagaattgatacttgccatactgtttttggtaaacgactccta
aaacagtggctttgtgccccactgtgtagcccttttgcaatcaatgaccgtctggatgcc
atagaagacctcatggttgtgcctgacaaaatctctgaagtcacagatcttctaaagaag
cttccagatcttgagaggctactaagtaaaattcataatgttgggtctcccctaaagagc
cagaaccaccctgatagtagggctataatgtatgaagaaactacatacagcaaaaaaaag
attattgattttctttctgctcttgaaggattcaaagtaatgtgtaaaattatagaaatt
atggaagaagtcgttgatgattttaaatccaaaatccttaagcaggttattactctacag
acaaaaaatcctgaaggccgctttcctgatttgacttcagaactgaaccgatgggataca
gcctttgaccatgaaaaagctcgaaagactggactgattactcccaaagcaggatttgac
tcagattatgaccaagctcttgctgacataagagaaaatgaacaaagcctcttggagtac
ttagagaaacagcgcaatcgaataggctgtaggaccatagtatattgggggattggtagg
aaccgttaccagctggaaattccagagaatttcaccacccataatttgccagaagaatat
gagctgaaatctaccaagaagggctgtaaacgatattggaccaaaactattgagaagaag
ttggctaatctgataaatgctgaagaacgtagagatacatcgttgaaggactgcatgcgg
cgactattctataactttgataaaaattataaggactggcagtctgctgtagagtgcatt
gcagttttggatgtcttaatatgcctagctaactatagtcaaggtgctgatggtcctatg
tgtcgcccagtgattctgttaccaggagaagacattctccctttcttagagcttaaaggg
tcacgacatccctgcattatgaagaccttttttggagatgattttattcctaatgacatt
ctgataggctgtgaggaagaagagaaagaaaatggcaaagcttattgtgtgcttgttact
ggaccgaatatggggggcaagtctacactcataagacaggctggcctattagccgtaatg
gcccagatgggctgttatgtgcctgctgaagtgtgtaggctcacaccagttgacagagtg
tttactagacttggtgcctcagatagaataatgtcaggtgaaagtacattttttgttgaa
ttaagtgaaactgccagcatacttacacatgcaacagcacattcacttgtgcttatggat
gaattaggaagaggtactgcaacatttgatgggacagcaatagcaaatgcagttgttaaa
gaacttgctgagaccataaagtgtcgtacgttgttttctacccactatcattcactggta
gaagattattctaaaaatgttgctgtgcgcctaggacatatggcatgcatggtagaaaat
gaatgtgaagacccaagccaggagactattaccttcctctataaattcattgaaggagct
tgtcctaagagctatggctttaatgcagcaaggcttgctaatcttccagaggaagttatt
caaaagggacacagaaaagcaagagaatttgagaagatgacccagtcactacgactattt
cgggaagtttgcctggctagtgaaaggtcgactctagatgctgaagctctccataagttg
ctgagtctgattaaggagttatag

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