Sciurus carolinensis (gray squirrel): 124963221
Help
Entry
124963221 CDS
T08117
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124963221
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncar03021
]
124963221
Enzymes [BR:
ncar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124963221
Transcription machinery [BR:
ncar03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
124963221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
124963221
NCBI-ProteinID:
XP_047378759
LinkDB
All DBs
Position
13:726625..785789
Genome browser
AA seq
1700 aa
AA seq
DB search
MSGPRHTPWRRLQGISFGMYSAEELRKLSVKSITNPRYLDSLGNPSANGLYDLALGPADS
KEVCSTCVQDFHNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVVYLL
VCQLRVLEVGALQAVYELERILNRFLEENADPSAFEIQDELEKYTTKVLQNNLLGAQGTH
VKNVCESRSKLIAYFWKAHMSAKRCPHCKTGRSVIRKEHNSKLTITFPSMVHRKSSQKDA
EPLGIEEAQMGRRGYLTPSSAQEHLFSIWKNEGFFLNYLFSGLDDVGMESRFNPSMFFLD
FMVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPCEVAALTT
DEEKDSSMVVDRSFLGTLPGQSLTDKLYNMWVRLQSHVNIVFDSEMDKLMMEKYPGIRQI
LEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL
RQAVINGPNVHPGASMVINEDGSRTALSAVDGSQREAVAKQLLTPATGAPKPQGTKIVCR
HVRNGDVLLLNRQPTLHRPSIQAHHARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQ
SELGRAEAHVLACTDQQYLVPKDGQPLAGLIQDHMVSGVNMTTRGCFFTREQYVELLYRG
LTDKAGRVKLLPPAILKPFALWTGKQVVSTLLINVIPEGYVPLNLSGKAKVSGKAWVKET
PRPVAGLHPDSMCESQVLIREGELLCGVLDKAHFGSSAYGLVHCCYEVYGGGTSGQVLTC
LARLFTAYLQLYRGFTLGVEDILVRPKADAERRRIIEESAHCGPQAVRAALNLPEAASRA
EVRGKWQDAHLGKDQRDFNTIDLKFKEEVNRYSNEINKACMPLGLHRQFPENNLQMMVQS
GAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIR
PPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYG
EDGLDIPKTQFLQPRQFPFLASNYQVIMRSKHLQEALSRADPAKALGHFRALRRWRSKHP
QGPQRTGAFLSFSRKMQGAVKALGLAGRTQNGRSAEAQQMLQMWRELDERRRQRLQKKAA
PCPDPSLAVWRPDIYLASVSERFEKQVDDFSQGWAGAQKQHQKLELSPDRLRTLLQLKWQ
RSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKT
PMMSVPVLNTKKALKRVKSLRKQLTRVCLAEVLQKIDVQESFCVGDKQNKFRVYELRFQF
LPHECYKQEKCLRPEDILHFMETRFFKLLMDAIRKKSSKESTFRSVNARRATQRDLEGAG
ESEPRRGEQEGEEEEEGNIVNAEAEEGDADASDAKRRQKQEEEVDYESEEEEEQEEEDAQ
EEGDAQAPEPDEEVGSGPEEDLPQSPPPSPGPKGAEAVERRVQAVREAHSFIQDYQYDAA
ESLWCQVTVRLPLGKANFDMGSLLESLAHSAVVYSARGITRCLLNETTTSRGEKELVLHA
EGTNLPELFKFAEVLDLRRLYSNDIHAMASTYGIEAALRVIEKEIKDVFAVYGIAVDPRH
LSLVADYMCFEGIYKPLNRLGIRSNSSPLQQMTFETSFQFLKQATMMGSHDELRSPSACL
VVGKVVKGGTGLFELKQPLR
NT seq
5103 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggccccagacacacgccctggcggcggctacagggcatttccttcgggatgtat
tcggccgaggagctcaggaagctaagtgttaagtctattacgaaccctcggtacctggac
agcctggggaacccatcagcaaacggcctgtatgacttagctttaggccctgcggattcc
aaagaggtgtgctccacttgtgtgcaagatttccacaactgctccgggcacctgggccac
attgagctgccgctcacagtgtacaacccgctcctcttcgataaactctacctgctgctc
cgaggctcctgtttaaactgccacatgctgacttgtccccgggccgtggtttacctcttg
gtctgccagctgagagttctggaagtgggggccttacaagcagtgtacgagctagagcga
atcctaaaccggtttctggaagaaaatgctgatccttctgccttcgaaattcaggacgag
ttagagaagtacacaaccaaggttctgcagaacaacctcctgggggcccagggcacacac
gtgaaaaatgtgtgtgagagcaggagcaaactcattgcttacttctggaaggcacacatg
tctgctaagcgatgtccccattgcaagactgggcggtcagttattcgaaaggagcacaac
agcaagctgacaatcacatttccatccatggtgcacaggaagtctagccagaaggacgct
gagcccctaggaatcgaggaagctcagatgggaagacgagggtacctgacccccagcagc
gcccaggagcatctcttttccatttggaagaatgaagggttttttctgaattaccttttc
tcgggactggatgatgttggcatggaatccagattcaacccgagtatgttctttctggac
ttcatggtggtgccgccctccaggtatcgccctgtcaatcgcctgggggaccagatgttt
accaacggccagacagtgaatttgcaggctgtcatgaaggatgtagttctgatccggaaa
cttctggctttgatggcccaagaacagaagttgccctgtgaggtggcagcgcttaccaca
gatgaggaaaaagactcttcgatggttgtggaccgatccttcttaggaacgctgccaggc
cagtctctcacagacaaactgtacaacatgtgggttcgccttcagagccacgtcaacatt
gtgtttgacagcgagatggacaaactcatgatggaaaagtaccctggcatcagacagatc
ctggagaagaaagagggcctgttccgaaagcacatgatgggcaagcgggtggactacgcg
gcccgctctgtcatctgcccggacatgtacatcaacaccaacgaaatcggaattcccatg
gtatttgcaacaaaactgacctaccctcagccagtgaccccctggaacgttcaggaactg
agacaggcagtcatcaatggtcccaacgtgcacccgggagcctccatggtcatcaatgaa
gacggcagtcgcacagccctgagcgctgtggatgggagccagcgcgaagctgtggccaaa
cagctcctgacgccagccactggagcacctaagccccaggggacaaaaattgtgtgccgg
cacgtgaggaatggggacgttctcctgctgaaccgacagcccaccctgcacaggccctcc
attcaggcccaccacgcccgcatcctgccgggagagaaagtcctgcggctccactacgcc
aactgcaaggcctacaacgccgacttcgacggggacgagatgaacgcccacttcccccag
agcgagctaggccgggccgaggcccatgtcctggcctgcactgatcagcagtacctggtt
cccaaggatggacagcccttggcagggctgatccaggaccacatggtttcaggcgtgaac
atgaccacccgaggctgcttcttcacccgggagcagtacgtggagttgctgtaccgaggg
ctcactgacaaagcagggcgcgtgaagctccttcctccggccatcctgaagccctttgca
ctctggacagggaagcaggtcgtgtccacgctgctcataaacgtaatccctgagggttac
gtcccactgaacttgtcgggaaaggcgaaagtcagcgggaaagcttgggtgaaggagact
cctcggcctgttgctggacttcaccccgactccatgtgcgaatcccaggtgctcatccgg
gagggcgagctgctctgcggcgtgctggacaaggcgcacttcgggagctccgcctacggc
ctggtgcactgctgctacgaggtctacgggggcgggaccagcggccaggtcctcacctgc
ctggcccggctcttcaccgcctacctgcagctctacagaggcttcaccctgggtgtggaa
gacattttagtcagaccaaaggcggacgcagagagacgcaggatcattgaggaatccgcc
cactgtgggccccaggctgttcgggctgcactaaacctgccagaagctgcatcacgtgct
gaggtccgagggaagtggcaggatgcccatctgggcaaggaccagagggattttaacacg
attgatctgaagttcaaggaggaggtgaaccgttacagcaatgagatcaacaaggcatgc
atgcctcttggcctgcacaggcagttcccggagaacaacctgcagatgatggtgcagtcg
ggagccaaggggtccactgtgaacaccatgcagatctcatgcctgctgggccagatcgag
ctggaagggcggaggcccccactgatggcgtccggcaagtcactgccctgcttcgagcct
tatgagttcacccccagggctggcggcttcgtcaccggaaggttcctcaccggcatcagg
ccccctgagttcttcttccactgcatggcagggcgagagggcctggtggacactgccgtg
aagaccagccgctcaggctacctgcagaggtgcatcatcaagcacctggaggggctggtg
gtccagtacgacctgacggtgcgcgacagcgacggcagcgtggtgcagttcctctacggg
gaggacggtctggacatccccaagacgcagttcctgcagcccaggcagtttcccttcctg
gccagcaactaccaggtgataatgaggtccaagcatctgcaggaagccctgtccagagca
gaccccgcgaaggctctgggccacttcagggctctccgaaggtggcgcagcaagcatccc
caagggccgcagaggacgggggccttcctgagcttctcccggaagatgcagggggcggtg
aaagccctgggcctggcgggcaggacccagaatggccgcagcgcagaggcccagcagatg
ctgcagatgtggcgcgagctggacgagaggcgccggcagaggctgcagaagaaggcagcc
ccttgccctgaccccagcctggccgtctggcggcccgacatctacttggcctctgtgtcg
gaacgttttgaaaagcaggtggatgacttcagccagggatgggcaggagcgcagaagcag
caccagaagctggagctctcgccagacaggttgaggaccctgctgcagctcaagtggcag
cgctcgctgtgtgacccgggcgaggctgtgggcctgctggccgcccagagcatcggggag
ccctccacacagatgaccctcaacaccttccacttcgcaggcagaggcgagatgaacgtc
accctgggcataccaaggttgagggagattctcatggtggccagcgccaacatcaagaca
cccatgatgagcgtgcccgtactcaacaccaagaaagccctgaagagagtgaagagcctg
aggaagcagctcaccagggtgtgcttagcagaggtgttgcagaaaatcgatgtccaggag
tccttctgtgtgggagacaaacagaacaaattccgggtgtacgagctgcggttccagttc
ctgccacacgagtgttacaagcaggaaaagtgtctgaggcccgaggacatcctgcacttc
atggaaacaaggttctttaagctcctgatggacgccatcaggaagaagagcagtaaggag
tccaccttcaggagtgtgaacgcgcggagggccacgcagcgggacctggaaggcgccggg
gagtcagagccgaggcggggcgagcaggaaggggaggaggaggaggaagggaacatcgtg
aacgctgaagccgaggagggggacgctgacgcctctgatgccaaacgcaggcagaagcaa
gaggaagaggtggactacgagagtgaggaggaggaggagcaggaggaggaggacgcgcag
gaggaaggggacgcccaggccccagagccagacgaggaggtgggctcaggccccgaggag
gacttgccccagagccctccgcctagcccagggcccaagggagccgaggccgtggagcgc
cgggtccaggcggtgcgcgaggcccactccttcatccaggactaccagtacgacgccgcg
gagagcctctggtgccaggtgaccgtgaggctccctctcgggaaggctaactttgacatg
ggctccctgctcgagtccctggcccacagcgccgtggtctacagcgccaggggcatcacc
aggtgcctcctgaacgagaccaccaccagcagaggcgagaaggagctggtgctgcacgcg
gaggggaccaacctcccggagctgttcaagttcgccgaggtgctggatctgcgccgcctc
tactccaatgacatccatgccatggccagcacgtacggcattgaggctgccctgcgggtg
atcgagaaggagatcaaggacgtgtttgctgtgtatggcattgccgtcgaccctcgccat
ctctccctggttgccgattacatgtgcttcgagggcatctacaagccgctgaaccgcctt
ggcatccggtcaaactcctcccctctccagcagatgacgtttgaaaccagtttccagttt
ctgaagcaggccaccatgatgggatcccacgacgaactgaggtccccttcggcctgcctc
gtggttgggaaggtcgtcaagggtgggacaggcctgtttgagctcaagcagcccctgagg
tag
DBGET
integrated database retrieval system
