Sciurus carolinensis (gray squirrel): 124963279
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Entry
124963279 CDS
T08117
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncar03041
]
124963279
03016 Transfer RNA biogenesis [BR:
ncar03016
]
124963279
Enzymes [BR:
ncar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124963279
Spliceosome [BR:
ncar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
124963279
Transfer RNA biogenesis [BR:
ncar03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
124963279
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
SPRY
Helicase_C
ResIII
CMS1
DUF5766
SNF2-rel_dom
Paramyxo_PNT
Motif
Other DBs
NCBI-GeneID:
124963279
NCBI-ProteinID:
XP_047378859
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All DBs
Position
13:complement(83125752..83164455)
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEVPPHMKNQALFPACVLKNAELKF
NFGEEEFKFPPKDGFVALSKAPDSYVVKSQHTGNAQVTQTKFLPNAPKALIVEPSRELAE
QTLNNVKQFKKYVDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTGKLN
LSQVRFLVLDEADGLLSQGYSDFINRMHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKNHIRTDDVHAKDNTRPGAN
SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQF
SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS
EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGNYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggccttctccgagatgggtgttatgcctgagattgcacaagctgtggaagagatg
gattggctcctgccaactgatatccaggctgaatccatccctttgatcttaggaggaggt
gatgtacttatggctgcagaaacaggaagtggaaaaactggtgctttcagtattccagtt
atacagatagtttatgaaactctgaaagaccaacaggaagggaaaaaaggaaaaacaaca
attaaaactggtgcttcagtgctcaacaaatggcaaatgaatccatatgacagaggatct
gcttttgcaattgggtcagatggtctttgttgccaaagtcgagaagtaaaggaatggcac
ggatgcagagccactaaagggttaatgaaagggaaacactactatgaagtatcctgtcat
gatcaagggttgtgcagagttgggtggtctaccatgcaggcttccctagacctaggtaca
gacaagtttggatttggctttggtggaacaggaaagaaatcccataacaaacagtttgat
aattatggagaggaattcactatgcatgacaccattggatgttacttagatatagataaa
gggcatgtcaaattctccaaaaatgggaaagatcttggactggcatttgaagtaccacca
catatgaaaaaccaagccctttttcctgcttgtgttttgaagaatgctgaactaaaattt
aactttggtgaagaagaatttaagtttccaccaaaagatggttttgttgctctttccaag
gccccggatagttacgttgtcaaatcacagcacacaggtaatgcacaggtgacacaaaca
aagtttctccccaatgctccaaaagctctcattgttgaaccgtctcgggagttggctgaa
caaactttgaataatgtcaagcagtttaagaaatatgttgataatcctaagttaagggag
cttctgataattggaggtgtcgcagctcgggatcagctctctgttttggataatggggtt
gatattgttgtaggcaccccaggaagactagatgatttggtgtcaactggaaagctgaac
ttatctcaagttagattcctggtcctggatgaagctgatggacttctttctcaaggttat
tctgattttataaatagaatgcacagtcagattcctcagattacctcggatggaaaaaga
cttcaggtgattgtttgctctgctactttgcattcttttgatgtaaagaaactctccgag
aaaataatgcattttcccacatgggttgatttaaaaggagaagattctgttccagatact
gtacaccatgttgttgtcccagtgaatcccaaaactgacagactctgggaaaggctagga
aaaaaccacattagaactgatgatgtacatgcaaaagacaatacaagacctggtgctaac
agtccagagatgtggtctgaagctattaaaatcctgaagggggagtatgctgtccgagca
atcaaggaacacaagatggatcaagcaattatcttctgtagaaccaaaattgactgtgat
aatttggagcagtactttatgcaacagggaggaggacctgataaaaaaggacaccaattc
tcatgtgtttgtcttcatggtgatagaaagcctcatgagagaaagcaaaatctggaaaga
ttcaagaaaggagacgtgagattcttgatttgcacagatgtagctgctagaggaattgat
atccatggtgttccttatgttatcaatgtcaccctgcctgatgaaaagcaaaactacgta
cacagaatcggcagagtaggaagagctgaaaggatgggtctggccatttccctggtggca
acagaaaaagaaaaggtttggtaccatgtctgcagcagtcgtggaaaagggtgttacaac
acgaggctcaaggaagatggtggctgtaccatctggtacaatgagatgcagcttttgtct
gagatagaagaacatctgaactgcaccatttctcaggttgagccagatataaaggttcca
gtggatgaatttgatgggaaagttacatatggtcagaagagggctgctggtggtggaaac
tataaaggccatgtggatattttggcacctaccgttcaagagttggctgcccttgaaaag
gaggcacagacatctttcctgcatcttggctaccttcctaaccagctgttcagaaccttc
tga
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