Sciurus carolinensis (gray squirrel): 124963395
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Entry
124963395 CDS
T08117
Name
(RefSeq) ubiquitin-40S ribosomal protein S27a
KO
K02977
ubiquitin-small subunit ribosomal protein S27Ae
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03010
Ribosome
ncar04120
Ubiquitin mediated proteolysis
ncar04137
Mitophagy - animal
ncar04140
Autophagy - animal
ncar05012
Parkinson disease
ncar05022
Pathways of neurodegeneration - multiple diseases
ncar05167
Kaposi sarcoma-associated herpesvirus infection
ncar05171
Coronavirus disease - COVID-19
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09122 Translation
03010 Ribosome
124963395
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
124963395
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124963395
04137 Mitophagy - animal
124963395
09160 Human Diseases
09172 Infectious disease: viral
05171 Coronavirus disease - COVID-19
124963395
05167 Kaposi sarcoma-associated herpesvirus infection
124963395
09164 Neurodegenerative disease
05012 Parkinson disease
124963395
05022 Pathways of neurodegeneration - multiple diseases
124963395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03011 Ribosome [BR:
ncar03011
]
124963395
04121 Ubiquitin system [BR:
ncar04121
]
124963395
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ncar04147
]
124963395
Ribosome [BR:
ncar03011
]
Ribosomal proteins
Eukaryotes
Small subunit
124963395
Archaea
124963395
Ubiquitin system [BR:
ncar04121
]
Ubiquitins and ubiquitin-like proteins
Ubiquitins
124963395
Exosome [BR:
ncar04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
124963395
Exosomal proteins of colorectal cancer cells
124963395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ubiquitin
Ribosomal_S27
Rad60-SLD
Ubiquitin_2
Rad60-SLD_2
DUF2604
Dsc3_N
TBK1_ULD
Ubiquitin_5
OTU1_UBXL
Motif
Other DBs
NCBI-GeneID:
124963395
NCBI-ProteinID:
XP_047379058
LinkDB
All DBs
Position
13:complement(48137598..48139838)
Genome browser
AA seq
156 aa
AA seq
DB search
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
CPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK
NT seq
471 nt
NT seq
+upstream
nt +downstream
nt
atgcagattttcgtaaaaacccttacggggaagactatcacgctcgaggttgaaccctcg
gacactatagaaaatgtaaaggccaagatccaggataaggaaggaattcctcctgatcag
caaagactgatctttgctggtaaacaactggaagatggacgtactttgtctgactacaac
attcagaaggagtccactcttcatcttgtgctaaggcttcgtggtggtgctaagaaaagg
aagaagaagtcttacaccactcccaagaagaacaagcataagagaaagaaggttaagttg
gctgtcctgaaatattataaggtggatgaaaatggcaaaattagtcgccttcgccgggag
tgcccttcagatgaatgtggtgctggagtttttatggccagccactttgacagacattat
tgtggcaagtgttgtctgacttactgcttcaacaaaccagaagacaagtaa
DBGET
integrated database retrieval system
