Sciurus carolinensis (gray squirrel): 124963401
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Entry
124963401 CDS
T08117
Name
(RefSeq) poly(A) polymerase gamma isoform X1
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124963401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124963401
Enzymes [BR:
ncar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
124963401
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
124963401
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
MTPAP-like_central
Nrap_D2
DUF4269
GH97_C
Motif
Other DBs
NCBI-GeneID:
124963401
NCBI-ProteinID:
XP_047379069
LinkDB
All DBs
Position
13:complement(42869937..42904424)
Genome browser
AA seq
740 aa
AA seq
DB search
MKEMSANTMLDSQRQQKHYGITSPISLACPKEIDHIYTQKLIDAMKPFGVFEDEEELNHR
LVVLGKLNNLVKEWISDVSESKNLPPSVVATVGGKIFTFGSYRLGVHTKGADIDALCVAP
RHVERSDFFQSFFEKLKHQDGIRNLRAVEDAFVPVIKFEFDGIEIDLVFARLAIQTISDN
LDLRDDSRLRSLDIRCIRSLNGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNML
GFLGGVSWAMLVARTCQLYPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWD
PRVNPSDRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKL
LEPPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSF
PGNKEHHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGM
KIEATHVKKKQLHHYLPAEILQKKKKQSLSDVSRCSGGLQSKRSSLDSSCLDSSRDTDNG
TPFNSPVSTNKTSKPESPAGEAERNSAEPAAVIMEKPLSVPPAQGLSIPVIGAKVDSTVK
AVSPPAVCTIPTVVGRNVIPRITTPHNPAQGQPHLNGLSNISKNVTPKRSHSPSVDGTSK
RLKDIEKFIRLESAFKDSHAAEERKRKSVDAIGGESMPIPTIDTSRKKRLPSKELPDSSS
PVPANNIRVIKNSIRLTLNR
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagatgtctgcaaacaccatgctggacagccagcgtcaacaaaagcattatgga
attacttctccaattagtttggcatgtcctaaagaaattgatcatatttacacgcaaaaa
ttaatcgatgccatgaaaccatttggagtatttgaagatgaggaagaattgaaccacagg
ttggttgttcttggtaaattgaataatttagtaaaagaatggatttctgatgtcagtgag
agtaagaatctcccaccttctgttgtggctactgttggaggtaaaattttcacatttgga
tcctataggcttggagtacacaccaaaggagctgacattgatgcactttgtgtagctccc
agacacgtggaaagatctgatttttttcagtctttttttgaaaaattgaaacatcaagat
ggaattagaaacttaagagctgtagaagatgcttttgtacctgttataaaatttgaattt
gatggtattgaaattgatctagtctttgcaagactggcaatacaaaccatatcagataat
ttagatctaagagacgactctcgcctgagaagccttgatataaggtgtattcgcagctta
aatggatgtagagttactgatgaaattttgcatttagtgccaaataaagaaacttttaga
ctcaccctaagagcagtcaaattatgggcaaaacgacgtggtatttattccaacatgctg
ggatttcttggtggtgtctcctgggcaatgctagttgcaagaacttgccaattatatcca
aatgctgcagcttctaccttagttcataagttttttttagttttttccaagtgggaatgg
ccaaatcctgtgctgttgaagcaaccagaagaaagcaatttgaatttacctgtctgggat
cctcgggtaaatccatcagataggtatcatctcatgcccataatcacccctgcctaccca
caacagaattctacgtataatgtgtccacatcaactcgaacagtaatggtagaagaattt
aaacaaggtcttgcagttacagatgaaattcttcaaggaaaatcagattggtccaaatta
cttgaaccaccaaatttctttcaaaagtatagacattatatagtattaactgccagtgca
tcaacagaagaaaaccatctagagtgggttggattagtagaatctaaaattcgtgttctt
gttggaaacttggaacggaatgaatttattactcttgcccatgtgaatccccagtcattc
ccaggaaataaagaacatcataaagacaacaattacgtatcaatgtggttcctcgggata
atttttcggagagtagaaaatgcagaaagtgttaacatagacttgacatatgatatacag
tcatttactgatacagtgtacagacaggcaaacaatataaatatgctaaaggagggaatg
aaaattgaagcaactcatgtaaagaaaaaacaacttcatcactatcttccagcagagatt
cttcaaaagaagaaaaagcaaagcctctctgatgtcagtcggtgttcaggtggacttcag
tccaaaagatcatctctggatagtagttgtctggatagttccagagacactgataatgga
acaccttttaattccccagtgtctacaaacaaaacttccaaacctgaaagtcctgcagga
gaagcagaaagaaatagtgctgaacctgctgctgtaattatggaaaaaccactgagtgtc
ccaccagctcaaggattgtctattccagtcatcggtgcaaaggttgactctacagtgaag
gctgtatcacccccagctgtgtgcactattcctactgtagtagggcgaaatgttattcct
agaatcacaacaccccacaaccctgcccagggacaaccgcatctaaatggattgtcaaat
atatccaagaatgttacacccaaaagatctcattccccatctgtagatgggacttctaaa
aggttgaaagacatagagaagtttattcgacttgaatcagcatttaaggactcccatgct
gctgaagagagaaaaagaaaatcagtggatgccattggaggagaatctatgcctattcca
actattgatacgtcacgcaaaaagagactaccaagtaaagaactaccagattcatcatct
ccagttccagcaaataacatccgtgtcatcaaaaattccattcgactgacccttaatcgg
taa
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