Sciurus carolinensis (gray squirrel): 124963538
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Entry
124963538 CDS
T08117
Name
(RefSeq) calsyntenin-1 isoform X1
KO
K22659
calsyntenin 1
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ncar04515
]
124963538
Cell adhesion molecules [BR:
ncar04515
]
Cadherins
Cadherin related
124963538
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Gene cluster
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
Laminin_G_3
Laminin_G_2
CDC45
FAM176
EphA2_TM
Glyco_hydro_16
V_ATPase_I
Cadherin_C_2
SID-1_RNA_chan
PFF1_TM
SMP_2
TMEM132_C
Motif
Other DBs
NCBI-GeneID:
124963538
NCBI-ProteinID:
XP_047379237
LinkDB
All DBs
Position
1:202433238..202493795
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AA seq
971 aa
AA seq
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MLRRPAPALAPAAGLLLAGLLCGGGVWAARANKHKPWLEPTYHGIVTENDNTVLLDPPLI
ALDKDAPLHFAGEICGFKIHGQNVPFDAVVVDKSTGEGVIRSKEKLDCELQKDYTFSIQA
YDCGKGPDGTGVKKSHKATVHIQVNDVNEYAPVFKEKSYKATATEGKQLDSLLRVEAVDA
DCSPQFSQICSYEIVTPDVPFTVDKDGYIKNTEKLSHSKERQYKLTVTAYDCGKRRAAED
ALVKISIKPSCTPGWQGWSDRVEYEPGTGALAVFPNIHLETCAAPVASVQATVELETSHI
GKGCDRDTYSEKSLHQLCGAAAGTAELLPAPSSSMNWTMGLPTDNGHDSDQVFEFNGTQA
VRVPDGLVSLSPREPFTISVWMRHGPFGRRKETILCSSDKADMNRHHYSLYVHGCRLVFL
LRQDPSEERKYKPAEFHWKLNQVCDEEWHHFVLNVEFPSVTLYVDGVPHEPFSVTEDYPL
HPSKIETQLVVGACWQEYSGVESDNETEPVTMASAGGDLHMTQFFRGNLAGLTVRSGKLA
DKKVIDCLYTCKEGLDLQVPEDVGRGVQIQASPSQSALTLEGEDVGELDKALQHVSYLNS
RQFPTPGIRRLKITSTVKCFNEAPCIAIPPVEGYVMVLQPEEPRISLSGVHRFARAASEF
EGSEGVFLFPELRIISTITREVEPEGDGPEDPTVQESLVSEEIVHNLDTCEVTVEGEELN
PEQESLEVDTARLQHTGLTVSRSALGVVFTGVDTMASYEEVLHLLRYRNWHTRSLLDRKF
KLICSELNGRYLSNEFKVEVNVIHTANPMEHASHMAAQPQFVHPEHRSFVDLSGHNLASP
HPFAVVPSTATVVIVVCVSFLVFMIILGVFRIRAAHQRTMRDQDSGKENEMDWDDSALTI
TVNPMETYEDQHSSEEEEEEEEEEESEDGEEEEDITSAESESSEEEEGGPGDGQNPNRQQ
QLEWDDSTLSY
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgccgccctgcgcccgcgctggccccggccgccgggctgctgctggccgggctg
ctgtgcggcggcggggtctgggccgcgcgagccaacaagcacaagccttggctggagccc
acctaccacggcatcgtcaccgagaacgacaacacagtgctgctcgaccccccgctgatc
gccctggataaagatgctcctctgcactttgcaggtgagatttgtggctttaaaattcac
gggcagaatgtcccctttgatgcagtagtagtggataaatccacgggcgagggggtaatc
cgctcgaaagagaagctggactgtgagctgcagaaggactacacgttctccatccaggcc
tacgactgcgggaagggccccgacggcaccggcgtgaagaagtctcacaaagcaactgtc
cacattcaggtgaacgacgtgaacgagtacgcgcctgtgttcaaggagaagtcctacaag
gccacggccacggaggggaagcagctcgacagcctccttagggtggaggccgtggacgca
gactgctccccgcagttcagccagatctgcagctacgagattgtcacccccgacgtgccg
ttcaccgtggacaaggacggttatataaagaacacggagaagctcagccacagcaaggag
cggcagtacaagctgacggtcaccgcctacgactgtgggaagagaagggccgcggaggac
gcgctggtgaagatcagcatcaagcccagctgcacgcccgggtggcaaggctggagcgac
cgggtggagtatgagcctggcacgggcgctttggccgtgttccccaacatccacctggag
acctgtgccgcgcccgtcgcctccgtgcaggccaccgtggagctggagaccagccacatc
ggcaagggctgcgaccgcgacacctactccgagaagtcccttcaccagctctgtggggct
gctgctggtactgccgagctgctccccgcccccagcagctccatgaactggaccatgggc
ctccccaccgacaacggccacgacagcgaccaggtgtttgagttcaacggcacccaggcg
gtccgggtccccgacggccttgtttctctcagccccagagagcccttcaccatctcggtg
tggatgaggcatgggcctttcggcaggaggaaggaaacgatcctgtgcagttccgacaaa
gcagatatgaaccgacaccattattccctgtatgtccacgggtgccggcttgttttcctc
ctccgtcaggatccttctgaggagaggaaatacaaacctgcggaatttcactggaagttg
aatcaggtctgtgatgaggagtggcaccactttgtcctcaacgtggagttcccgagcgtg
actctctacgtggatggtgtccctcacgagcccttctccgtgaccgaggattacccactc
catccatccaagatagaaacgcagcttgtggtcggggcttgctggcaagagtattcagga
gttgaaagtgacaatgagactgagcctgtgactatggcctctgcaggtggcgacctgcac
atgacccagtttttccgaggtaacctggctggactaacggtgcgttccgggaagctcgca
gacaagaaggtgatcgactgtctgtatacctgcaaagagggacttgacctacaggtccct
gaagacgtgggcagaggcgtgcagatccaagcaagccccagccagtcagccttgaccttg
gagggagaggacgtcggggagctggacaaggccctgcagcacgtctcctacctgaactcg
cggcagttccccacgcccggcatccgcaggctcaaaatcaccagcaccgtcaagtgtttt
aatgaggcgccctgcatcgcgatccccccggtcgaaggctacgtgatggttttgcagccg
gaagagcccaggatcagcctgagtggcgtccaccgcttcgcccgagcagcgtcggagttt
gagggctcagaaggggttttcctgtttcccgagcttcgaatcatcagcacaatcacgcga
gaagtggagccggagggggacggacccgaggaccccacagttcaagagtccctggtgtcc
gaggagatcgtgcacaacctggacacctgcgaggtcacggtggagggagaggagctgaac
cccgagcaggagagcctggaggtggacacggcacggctgcagcacacgggcctcacagtg
agccgctctgccctgggcgtggtcttcacaggcgtggacaccatggccagctacgaggag
gttttgcacctcttgcgctaccgcaattggcacaccaggtccctgctcgaccggaagttc
aagctcatctgctctgagctcaatggccgctacctcagcaacgaatttaaggtggaggtg
aacgtgatccacaccgccaaccccatggagcacgccagccacatggctgcccagccacag
ttcgttcaccccgagcaccgctccttcgtcgacctgtcggggcacaacctggccagtcct
caccccttcgcagttgtccccagcaccgccaccgtggtgatcgtggtgtgcgtcagcttc
ctggtgttcatgatcatcttgggggtgtttcggatccgggctgcacatcaacgaaccatg
cgggaccaggactcggggaaggagaacgagatggactgggacgactctgccttgaccatc
accgtgaaccccatggagacctacgaagaccagcacagcagtgaggaggaggaggaggag
gaagaggaggaagagagcgaggatggagaggaggaggaagacatcaccagcgccgagtca
gagagcagcgaggaggaggagggtggccctggggacggccagaaccccaaccggcagcag
cagctcgagtgggacgactccacgctgagctactga
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