Sciurus carolinensis (gray squirrel): 124963591
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Entry
124963591 CDS
T08117
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
124963591
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ncar04812
]
124963591
Cytoskeleton proteins [BR:
ncar04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
124963591
Intermediate filaments
Intermediate filament-binding proteins
124963591
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
SLATT_6
SOS1_NGEF_PH
PH_11
Motif
Other DBs
NCBI-GeneID:
124963591
NCBI-ProteinID:
XP_047379308
LinkDB
All DBs
Position
13:complement(48681233..48868053)
Genome browser
AA seq
2364 aa
AA seq
DB search
MTTTVATDYDNIEIQQQYSDVNNRWDVDDWDNENSSARLFERSRIKALADEREAVQKKTF
TKWVNSHLARVSCRITDLYTDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHCLENVDKAL
QFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVETEDNKEKKSAKDALL
LWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNL
AEQHLGLTKLLDPEDISVDHPDEKSIITYVVTYYHYFSKMKALAVEGKRIGKVLDNAIET
EKMIEKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQLQAFNTYRTVEKPPKFTEKG
NLEVLLFTIQSKMRANNQKVYMPREGKLISDINKAWERLEKAEHERELALRNELIRQEKL
EQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLPAVEAATKKHEAIETDIAAYEERVQA
VVAVARELEAENYHDIKRITARKDNVIRLWEYLLELLRARRQRLEMNLGLQKIFQEMLYI
MDWMDEMKVLLLSQDYGKHLLGVEDLLQKHALVEADIGIQAERVRGVNASAQKFATDGEG
YKPCDPQVIRDRVAHMEFCYQELCQLAAERRARLEESRRLWKFFWEMAEEEGWIREKEKI
LSSDDYGKDLTSVMRLLSKHRAFEDEMSGRSGHFEQAIKEGEDMITEEHFGSEKIRERIT
YIREQWANLEQLSAIRKKRLEEASLLHQFQADADDIDAWMLDILKIVSSSDVGHDEYSTQ
SLVKKHKDVAEEITNYRPTIDSLHEQASALPQEHAESPDVRGRLSGIEERYKEVAELTRL
RKQALQDTLALYKMFSEADACELWIDEKEQWLNNMQIPEKLEDLEVIQHRFESLEPEMNN
QASRVAVVNQIARQLMHSGHPSEKEIKAQQDKLNTRWSQFRELVDRKKDALLSALSIQNY
HLECNETKSWIREKTKVIESTQDLGNDLAGVMALQRKLTGMERDLVAIEAKLSDLQKEAE
KLESEHPDQAQAILSRLAEISDVWEEMKTTLKNREASLGEASKLQQFLRDLDDFQSWLSR
TQTAIASEDMPNTLTEAEKLLTQHENIKNEIDNYEEDYQKMRDMGEMVTQGQTDAQYMFL
RQRLQALDTGWNELHKMWENRQNLLSQSHAYQQFLRDTKQAEAFLNNQEYVLAHTEMPTT
LEGAEAAIKKQEDFMTTMDANEEKINAVVETGRRLVSDGNINSDRIQEKVDSIDDRHRKN
REAASELLMRLKDNRDLQKFLQDCQELSLWINEKMLTAQDMSYDEARNLHSKWLKHQAFM
AELASNKEWLDKIEKEGMQLISEKPETEAVVKEKLTGLHKMWEVLESTTQTKAQRLFDAN
KAELFTQSCADLDKWLHGLESQIQSDDYGKDLTSVNILLKKQQMLENQMEVRKKEIEELQ
SQAQALSQEGKSTDEVDSKRLTVQTKFMELLEPLNERKHNLLASKEIHQFNRDVEDEILW
VGERMPLATSTDHGHNLQTVQLLIKKNQTLQKEIQGHQPRIDDIFERSQNIVTDSSSLNA
EAIRQRLADLKQLWGQLIEETEKRHRRLEEAHKAQQYYFDAAEAEAWMSEQELYMMSEEK
AKDEQSAVSMLKKHQILEQAVEDYAETVHQLSKTSRALVADSHPESERISMRQSKVDKLY
AGLKDLAEERRGKLDERHRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERF
REFARDTGNIGQERVDTVNHMADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQI
LAASYELHKFYHDAKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQV
RQLQEDAARLQAAYAGDKADDIQKRENEVLEAWKSLLDACEGRRVRLVDTGDKFRFFSMV
RDLMLWMEDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLAR
KHYASEEIKEKLLQLTEKRKEMIDKWEDRWEWLRLILEVHQFSRDASVAEAWLLGQEPYL
SSREIGQSVDEVEKLIKRHEAFEKSAATWDERFSALERLTTLELLEVRRQQEEEERKRRP
PSPEPSTKVSEEAESQQQWDTSKGEQVSQNGLPTEQGSPRMAETVDTSEMVNGAAEQRTS
SKESSPIPSPTSDRKAKSALPAQSAATLPARTQETPSAQMEGFLNRKHEWEAHNKKASSR
SWHNVYCVINNQEMGFYKDAKTAASGIPYHSEVPVSLKEAICEVALDYKKKKHVFKLRLN
DGNEYLFQAKDDEEMNTWIQAISSAISSDKHDLSASTQSTPASSRAQTLPTSVVTITSES
SPGKREKDKEKDKEKRFSLFGKKK
NT seq
7095 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccacagtagccacagactatgacaacattgagatccaacagcagtacagcgat
gtcaacaaccgctgggacgtggatgactgggacaacgagaacagctctgcgcggctcttt
gagcggtcccgcatcaaggctctggcagatgagcgtgaagctgtgcaaaagaagaccttc
accaagtgggtcaattctcaccttgcccgagtgtcctgccggatcacagacctgtacact
gaccttcgagatggacggatgctcatcaagctgctggaggtcctttctggagagagactg
cctaaaccaaccaaaggaagaatgcgcatccactgtctggagaatgtggacaaggccctt
cagttcctgaaagagcagagagttcatcttgagaacatggggtcccatgacattgtggat
gggaatcaccggctgacccttggcctcatttggaccatcatccttcgcttccagatccag
gacatcagtgtggaaacagaagataacaaagagaagaagtctgccaaggatgccttgcta
ttatggtgccagatgaagacagctgggtaccccaatgtcaacattcacaatttcaccact
agctggagagatggcatggccttcaatgcactgatacacaaacacagacctgatctgata
gattttgataaactgaagaaatccaatgcacactacaatctgcagaatgcatttaacctg
gcagagcagcatcttggcctcactaaactgttggaccctgaagacatcagtgtggaccac
cctgatgagaaatccattatcacttacgtggtgacttattaccactacttctctaagatg
aaggccttggctgttgaaggaaaacgaattggaaaggtgcttgacaatgctattgaaaca
gaaaaaatgattgagaaatatgaatcacttgcctctgaccttctggagtggattgaacaa
accatcattattctgaacaatcgcaaatttgccaactcactggttggggttcaacagcag
cttcaggcattcaacacttaccgcactgtggagaaaccacccaaatttactgagaagggg
aacttggaagtgctgcttttcactattcagagcaagatgagggccaacaatcagaaggtc
tacatgccccgagagggaaagctcatctctgatatcaacaaggcctgggaaagactggaa
aaagcagaacatgagagagaactggctctgcggaacgagctcataagacaggagaaactg
gaacagcttgcccgcagatttgaccgcaaggcagctatgagggagacttggctgagcgaa
aaccagcgtctggtgtctcaggacaactttggatttgaccttcctgccgttgaggctgcc
acaaaaaagcatgaggccattgagacagacattgctgcctatgaggagcgtgtgcaggct
gtggtggctgtggccagggagcttgaggcagagaactaccatgacatcaaacgcatcaca
gcaaggaaggacaatgtcatccggctctgggaatacctgctggaactactcagggctcgg
agacagcgtctcgagatgaacctagggctacagaagatattccaggaaatgctctacatt
atggactggatggatgagatgaaggtgctattattgtctcaagactacggcaaacactta
ctcggcgtggaagacctgttacagaaacatgctctggttgaagcagacattggaatccag
gcagagcgtgtgagaggcgtcaatgcttctgcccagaagtttgcaacagatggggaaggc
tacaagccctgtgacccccaggtgatccgagaccgtgtggcccacatggaattctgctat
caagagctttgccagctggcggcggagcgccgagcccgtctcgaggagtcccgtcgcctc
tggaagttcttttgggaaatggcagaagaggaaggctggattcgggaaaaggagaagatt
ctgtcctctgatgattatgggaaggacttgaccagtgtcatgcgcctgctcagcaagcac
cgggcattcgaggatgagatgagtggccgtagtggccactttgagcaggccatcaaggaa
ggtgaagacatgatcacagaggaacactttggatcagaaaagatccgtgagaggatcact
tacattcgggagcagtgggccaatctggagcaactctcggccattcggaagaagcgccta
gaagaggcttcgctgctgcaccagtttcaggcggatgctgatgacatcgacgcctggatg
ctggacatcctcaagattgtctccagcagcgacgtgggccacgacgagtactccacacag
tctttggtcaaaaaacacaaggatgtggcagaagagatcaccaactacagacccaccatt
gactcactgcatgagcaagccagcgccctcccccaggagcatgcagagtctccagatgtg
agaggcaggctgtcaggcattgaggagcggtacaaggaggtggcagagctgacaaggctg
aggaagcaggcgctgcaagacaccctggccctgtacaagatgttcagtgaggctgacgcc
tgtgagctctggattgatgagaaggagcagtggctcaacaacatgcagatcccagagaag
ctggaggacctggaggtcatccagcatagatttgagagcctagaaccagaaatgaacaac
caggcctcccgggttgctgtggtgaaccagattgcacgccagctgatgcacagtggccac
cccagtgagaaagaaatcaaagctcagcaggacaagctcaacacaaggtggagtcagttc
agagaactggtggacaggaagaaagatgctcttctctctgccctgagcatccagaactac
caccttgagtgcaatgaaaccaaatcttggattcgggaaaagaccaaagttattgagtct
acccaggacctgggcaatgacctggctggtgtcatggccttgcagcgcaagctgactggc
atggagcgggatctggtggccattgaggcgaagctgagcgacctgcagaaggaagcagag
aaactggagtctgaacaccctgaccaggctcaggccatcctgtcccgtctggctgagatc
agcgacgtgtgggaggaaatgaagaccaccctgaagaacagagaggcctccctgggagag
gccagcaagctgcagcagttcctgcgggacttggatgacttccagtcctggctctccagg
acccagacagccatcgcctcggaggacatgcccaacactctgaccgaggcagagaagctt
ctcacgcagcacgagaacatcaaaaacgagattgacaactacgaggaggactaccagaag
atgagggacatgggtgagatggtcacacagggacaaacggatgcccagtacatgtttctc
cggcagcgactacaggcgttggacactggatggaatgagctccacaaaatgtgggagaac
aggcagaatctcctctctcagtctcatgcctaccagcagttccttagggacacaaagcaa
gccgaagcctttcttaacaaccaggagtatgttttggctcatactgaaatgcccaccacc
ctggaaggtgctgaagcagctattaaaaaacaagaggacttcatgaccaccatggatgcc
aatgaggagaagatcaatgctgttgtggagacgggccggaggctggtgagcgatgggaac
atcaactccgatcgcatccaggagaaggtggactctattgatgacagacataggaagaat
cgtgaggcagccagtgaactcctgatgagattaaaggacaacagggatcttcagaaattc
ctgcaagattgtcaagagctgtccctgtggatcaatgaaaagatgctcacagcccaggac
atgtcctatgatgaagccaggaatctgcacagtaaatggctaaaacatcaagccttcatg
gcggaacttgcatccaacaaagaatggcttgacaagattgagaaggaaggaatgcagctt
atatcagaaaagcctgagactgaagctgtggtaaaggagaaactcactggtttacataaa
atgtgggaagtccttgaatccaccacccagaccaaggcccagcggctctttgatgcaaac
aaggctgaacttttcacccagagctgtgcagatctagacaagtggctgcacggcctggag
agtcagattcaatctgatgactatggcaaagaccttaccagtgtcaatatcctgctgaaa
aagcaacagatgctggaaaatcagatggaggtgcggaagaaggagattgaggagctccag
agccaagcccaggcactaagtcaggaggggaagagcactgacgaagtggatagcaagcgt
ctcactgtacagaccaagttcatggagctgttggaacccttgaatgaaaggaaacataac
ctgctggcctccaaagagatccatcaattcaaccgggatgtggaggatgagatcttgtgg
gttggtgagaggatgcctttggcgacttccacagatcatggccacaaccttcagactgtg
cagctgttaataaagaaaaatcagaccctccagaaagaaatccaggggcaccagcctcga
atcgatgacatctttgagaggagccaaaacatagtcactgacagcagcagcctcaatgct
gaggccatcagacagaggcttgctgacttgaagcagctgtggggccaacttatagaggag
acagagaaacggcacagacggctggaggaggcacataaggcccagcagtactattttgat
gcagctgaggctgaggcgtggatgagcgagcaggagctgtacatgatgtctgaggaaaag
gccaaggatgagcagagtgctgtctccatgttgaagaagcaccaaatcttggaacaagct
gttgaggactatgcagagacagtacaccaactctccaagaccagtcgggccttggtggcc
gacagccaccctgaaagtgagcgcattagcatgcggcagtccaaagtggataagctgtat
gctggcctgaaggacctggcagaggagaggagaggcaagctggatgaaaggcacaggttg
ttccagctcaacagggaggtggacgacctggagcagtggatcgccgagagggaggtggtt
gcagggtcccatgaactggggcaagactatgagcatgtcacaatgttacaagaacgattc
cgggaatttgctcgagacactggaaacattggacaggagcgcgtggacacagtcaatcac
atggctgatgaactcataaactctggacattcggatgctgccaccattgccgagtggaag
gatggcctcaatgaagcctgggctgacctcctggagctcattgacacaaggacacagatt
cttgctgcctcctatgaactgcataagttttaccatgatgccaaggaaatcttcgggcgc
atccaggataaacataagaaactccctgaggaacttgggagagatcagaacactgtggag
accttgcagagaatgcacaccacctttgagcatgatatccaggctctgggcactcaggtg
aggcagttgcaagaggacgcagcccgcctccaggcagcttatgcaggggacaaggccgat
gacatccagaaacgcgagaacgaggtcctggaagcctggaagtccctgctagatgcctgt
gagggccgcagggtacggctggtggacacaggggacaaattccgctttttcagcatggtg
cgtgacctcatgctctggatggaggatgtcatccggcagattgaggcccaggagaagcca
agggatgtatcatctgttgaactattaatgaataatcatcaaggtatcaaagctgaaatt
gatgctcgtaatgacagtttcaccacctgcattgaattggggaaatccctgcttgcaaga
aaacactacgcttctgaggagatcaaggaaaagttactgcagttgactgaaaaaagaaaa
gaaatgattgacaagtgggaagaccgatgggagtggttaagactgattttggaggtccat
cagttctcaagggatgccagcgtggctgaggcctggctgctggggcaggagccataccta
tccagtcgcgaaatcggccagagcgtggatgaggtggagaagctcatcaagcgccatgag
gcatttgaaaagtctgcagcaacctgggatgagaggttctccgccctggagaggctgaca
acattggaattactggaagtgcgcagacagcaagaggaagaggaaaggaagaggcgaccg
ccttcgcccgagccaagcacgaaggtttcagaggaggcagagtcccagcagcagtgggat
acttcaaaaggagagcaagtttcccagaatggtttgccgactgaacagggatctccacgg
atggcagaaaccgtggacacaagcgaaatggtcaatggcgctgcagagcagaggacgagc
tcaaaggagtccagccccatcccctccccaacctctgaccgcaaagccaagtctgccctc
ccagcccagagtgccgccaccctaccagccagaacccaggagacgccctcggcccagatg
gaaggcttcctgaaccggaagcacgagtgggaggcccacaataagaaagcctccagcagg
tcctggcacaatgtttattgtgtcataaataaccaagaaatgggtttctataaagatgca
aagaccgctgcttctggaatcccatatcacagtgaggtccctgtgagtttgaaagaagcc
atctgtgaagtggcccttgattacaaaaagaagaaacacgtgttcaagctcagactaaat
gatggcaatgagtacctcttccaagccaaagacgatgaggaaatgaacacgtggatccag
gccatctcctccgccatctcctctgataaacacgacctgtctgccagcacccagagcacg
ccagcatccagccgggcacagaccttacccaccagcgttgtcaccatcaccagcgagtcc
agccccggcaagcgggagaaggacaaagagaaagacaaagagaagcggttcagccttttt
ggcaaaaagaaatga
DBGET
integrated database retrieval system
