Sciurus carolinensis (gray squirrel): 124963720
Help
Entry
124963720 CDS
T08117
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124963720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncar03041
]
124963720
Enzymes [BR:
ncar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124963720
Spliceosome [BR:
ncar03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
124963720
Complex C
U5 SnRNP specific factors
124963720
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Motif
Other DBs
NCBI-GeneID:
124963720
NCBI-ProteinID:
XP_047379535
LinkDB
All DBs
Position
13:complement(5727601..5755660)
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVI
VFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDGTLKETLLNGVGYL
HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATG
AHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtgaccgcccgaagcctgcagtacgagtacaaggcgaactcgaatcttgtg
ctccaagccgaccgctctctcattgaccggacccgccgggatgaacccacaggagaggtg
ctgtctctggttgggaagctggagggcacccggatgggagataaagctcagcggaccaaa
ccgcagatgcaggaggaaagaagagccaagcgaagaaaacgtgatgaggaccggcatgac
atcaacaagatgaagggttatactttgctgtcagagggcatagatgagatggtgggcatc
atctataagcccaaaactaaggagacccgagagacttatgaggtgctgctcagcttcatc
caggctgctcttggggaccagccacgtgatatcctttgtggggcagctgatgaagttctt
gctgtcctgaagaatgagaagctgcgggacaaggaaagacgaaaggagattgacctgctg
ctgggtcagacagatgataccagataccatgtgctagtaaacttgggcaaaaagatcaca
gactatgggggagacaaggaaatccaaaatatggatgacaacattgacgagacctacggt
gtgaatgtgcagttcgagtctgatgaggaggaaggtgatgaagacgtctatggggaggtt
cgagaagaggcatctgacgatgacatggagggtgacgaggctgtcgtgcgctgcaccctc
tccgctaacctcgtagcctcaggtgagctgatgagttccaagaagaaagatttgcaccct
cgggatatcgacgcgttctggcttcagcggcaactcagtcgtttctacgatgatgctatc
gtgtcacagaagaaggcagatgaagtgttggagattctgaagacggccagtgacgaccga
gaatgtgagaatcagctggtcctgcttctcggtttcaacacatttgactttattaaagtg
ttgcgacagcacaggatgatgattctgtactgtaccttgctggccagtgctcagagtgaa
gctgagaaggaaaggatcatgggaaagatggaagctgatccagaactgtccaaattcctc
taccagcttcatgagactgagaaggaggatctgatccgagaggaaaggtctcggagagag
cgagttcggcagtcccgaatggacacagacctggagaccatggatctggaccagggtgga
gaggcactggctccacggcaggttctggacttggaggacctggtattcacccaagggagc
cactttatggccaacaaacgctgtcagcttcctgatgggtccttccgtcgccagcgtaag
ggctatgaagaggtgcatgttcctgctctgaagcccaagccctttggctcagaagagcaa
ttgctcccggtggaaaagctgcccaaatacgcccaggctggatttgagggcttcaaaaca
ctgaatcgaatccagagtaaactgtaccgtgcagccctggagacggatgagaacctgctg
ctatgcgctcctaccggtgctgggaagaccaacgtggccctgatgtgcatgctccgagag
atagggaaacacatcaacatggatggcaccatcaacgtggatgacttcaagatcatctac
attgctcccatgaggtccttggtgcaggagatggtgggcagttttggaaagcgcctggcc
acttatggcatcactgttgctgaactgactggggaccaccagctgtgcaaggaagagatc
agcgccacacagatcatcgtctgcacccctgagaagtgggacatcattactcgtaagggc
ggtgaacgcacctacactcagctggtgcggctcatcatcctggatgagatccatcttctc
catgacgacagaggtcctgtcttagaagctttggtggccagagccatccgaaacattgag
atgacccaagaggatgtccgactcattggtctcagtgccaccctccccaactatgaagat
gtggccacctttctgcgtgtcgaccctgccaagggcctcttctactttgacaacagcttc
cgcccagtacctctggagcagacatacgtgggcatcacagagaaaaaagctatcaagcgt
ttccagatcatgaatgaaatagtttatgagaaaatcatggaacatgctggaaaaaatcag
gtgctggtgtttgtccactcccggaaggagactggcaagaccgctagggccatccgggac
atgtgcctggagaaggatactctgggtctgtttctgcgggagggctcagcttccacagag
gtccttcggacagaagcagaacagtgcaagaacttggagctaaaggatcttctgccttat
ggctttgctatccatcacgcgggcatgaccagagtcgaccgaacactcgtggaggatctt
tttgctgataaacacatccaggtcttggtttccacagcaactctagcttggggtgtgaat
ctccctgcccacacagtcatcatcaagggcacccaggtgtacagtccagagaaggggcgt
tggacagaactgggcgcactggacattctgcagatgctgggacgtgctggtcgaccccag
tatgacaccaagggtgaaggcatactcattacgtctcacggggagctacagtactacctg
tccctcctcaatcagcagcttcctatcgagagccagatggtgtcaaagttgcccgacatg
ctcaatgcagaaatcgtgctggggaacgtccagaacgcaaaggacgcagtgaactggctg
ggctatgcctacttgtatatccgaatgctccgatccccaaccctctatggcatctctcat
gatgacctcaagggagatcccttgctggaccagcgccgactggacctggttcacactgct
gccttgatgctggacaagaacaatctggtcaagtatgacaagaagacaggcaacttccag
gtgacagagctgggccgcatagccagccattactatatcaccaacgatactgtgcagacc
tacaaccagctgttgaagcccaccctgagtgagatcgaacttttcagagttttctccttg
tcctcagagttcaagaacatcactgtcagggaggaggagaaactggagctgcagaaactg
ctcgagagggtgcccatccccgtgaaggagagcattgaggagcccagtgcgaagatcaac
gtgcttcttcaagctttcatctcacaactgaaattggagggctttgcattgatggctgac
atggtatatgttacccagtcggcgggtcggctgatgcgagccatctttgaaattgtcctg
aaccgaggatgggcgcagcttacagacaagaccttgaacctctgcaagatgattgacaaa
cgcatgtggcagtccatgtgtcctctgcgccagttccggaaactccctgaggaggtggta
aagaagattgagaagaaaaacttcccttttgagcgcctgtatgacctgaatcataatgag
ataggggagctgatccgcatgccaaagatggggaagaccatccacaagtatgtgcacctg
ttccccaagctggagctgtcggtgcacctgcagcctatcacacgctccaccctcaaagtg
gagctgaccatcactccagatttccagtgggacgagaaggtccatggttcatcggaggcg
ttctggattctggtggaggatgtggacagcgaggtgattctgcaccatgagtattttcta
ctcaaggccaagtatgcccaggacgagcacctcattaccttcttcgttcccgtctttgag
ccactgccccctcagtacttcatccgagtggtgtctgaccgctggctctcttgtgagacc
caactgcctgtctccttccggcacctgatcctaccagagaagtacccacctcccactgaa
ctgctggacctgcaacctttgcccgtgtctgccctgagaaacagtgcctttgagagcctc
taccaagataaatttcctttcttcaatcccatccagacccaagtgttcaacaccgtgtac
aacagtgacgacaacgtgttcgtgggggcccccacgggcagcgggaagaccatctgtgca
gagtttgccatcctgcggatgctgctgcagaactcagaggggcgctgtgtctacattacc
cccatggaggccctggcagagcaggtctacatggactggtatgagaagttccaggacagg
ctcaacaagaaggtggtgctgctgaccggggagaccagcacagacctgaagcttctgggc
aaaggcaacatcatcatcagcacccctgagaagtgggacatactctcccggcggtggaag
cagcgcaagaacgtccagaacatcaacctcttcgtggtggacgaggtccaccttatcggg
ggcgagaatgggcctgtcttggaagtgatctgctcccggatgcgctacatctcctcccag
atcgagcgacccattcgcatcgtggcgcttagctcctcgctctccaatgcgaaggatgtg
gcccactggctgggctgcagcgccacctccaccttcaacttccacccgaacgtgcgccct
gtgcccttggagctgcacatccagggcttcaacatcagccacacacagactcgcctgctc
tccatggccaagcctgtgtaccacgccatcaccaagcactcacccaagaagcctgtcatc
gtttttgtcccgtctcgcaagcagacccgcctcactgccattgacatcctcaccacctgt
gcagctgacatccagcggcagaggttcttgcactgcacggagaaggacctgatcccgtac
ctggagaagctgagtgacggcaccctcaaggagacgctcctgaatggggtgggctacctg
cacgaggggctcagccccatggagaggcggctggtggagcagctcttcagctcaggggct
atccaggtggtggtggcttctcggagtctctgctggggtatgaatgtggccgcccacctg
gtgatcatcatggacacccagtactacaatggcaagatccatgcctatgtggattaccca
atctatgatgtgcttcagatggtgggccacgccaaccgccctctgcaggacgatgagggg
cgctgtgttatcatgtgtcagggctccaaaaaggatttcttcaaaaagtttttatatgag
ccattaccagtagaatctcaccttgaccactgtatgcatgatcacttcaatgctgagatt
gtcaccaagaccattgagaacaagcaggatgccgtggactacctcacctggacttttctg
taccgccggatgacacagaaccccaattactacaacctgcagggcatctcgcatcgtcac
ctttctgaccatttgtcagagctggtggagcagactctgagtgacctggagcagtccaag
tgcatcagcatcgaggatgagatggacgtggcgcctctgaacctgggcatgattgccgcc
tactattacatcaactacaccactattgagctcttcagcatgtccctgaacgccaagacc
aaggtgcgagggctcattgagatcatctccaatgcggcagagtatgagaacattcccatc
cggcaccatgaagacaacctcctgcggcagctggctcagaaggttccccacaagctgaat
aaccctaaattcaacgatccacacgtgaagaccaacctgctcctgcaggctcacctgtcc
cgcatgcagctgagcgccgagctgcagtcagacacggaggagatccttagcaaggcaatc
cggctcattcaggcctgtgtggacgtgctttccagcaatgggtggctcagccctgccctg
gcagccatggaactggcccaaatggtcacccaagccatgtggtccaaggactcatacctg
aagcagctgccacacttcacttcagagcacatcaaacgttgcacagacaagggggtggag
agtgttttcgacatcatggagatggaggatgaagagcgaaacgcgctgctgcagctgact
gacagccagatcgcagacgtggcccgcttctgcaaccgctaccccaatatcgaactgtcc
tatgaagtggtggataaggacagcatccgcagtggcggaccagtggtggtgctggtgcag
ctggagcgcgaggaggaagtcacaggccctgttattgcgcctctcttcccacagaaacgt
gaagagggctggtgggtggtgatcggagatgccaagtccaacagcctcatctccatcaag
aggctgaccctacagcagaaggccaaggtgaagctggacttcgtggccccagccactggt
gctcacaactacaccctctacttcatgagtgatgcttacatgggctgtgaccaggagtac
aaattcagtgtggatgtaaaagaagccgagacagacagcgactcggattga
DBGET
integrated database retrieval system
