Sciurus carolinensis (gray squirrel): 124964024
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Entry
124964024 CDS
T08117
Name
(RefSeq) multiple PDZ domain protein isoform X1
KO
K06095
multiple PDZ domain protein
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
124964024
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Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
L27_2
MPDZ_u10
DUF6288
Motif
Other DBs
NCBI-GeneID:
124964024
NCBI-ProteinID:
XP_047379857
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All DBs
Position
14:57027301..57195035
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AA seq
2069 aa
AA seq
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MLETIDKNRALQAAERLQVKLRERGDVANEDKLSLLKSVLQSPLFSQILNLQTSVQQLKD
QVSTATTVASNVEYAHIPHLGSAIIPTLQNESFLLTSNNGNLEALTGPGTPHINGKSACD
EFDQLIKNMAQGRHVEVFELLKPPCGGLGFSVVGLRSENRGELGIFVQEIQEGSVAYRDG
RLKETDQILAINGQALDQTITHQQAISILQKAKDAVRLVIARGSLPQLTSPRVSRSPSAA
STISAHSNPVHWQHVETIELVNDGSGLGFGIIGGKATGVIVKTILPGGVADQHGRLCSGD
HILKIGDTDLAGMSSEQVAQVLRQCGNRVKLMIARGAIEETTTPTSLGITLSSSPSSAPE
MRADASTQKNEESETFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDG
RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVHLTLMRRGTKQEGELISREDIMKDS
DVPLVNASINKENYEKDEDSLSLRRNTSILPIEEEGYQLIPAEVQETKDVQQEAALLTKW
QRIMGINYEIVVAHVSKFSENSGLGISLEATVGHHFIRSVLPEGPVGHSGKLFSGDELLE
VNGITLLGENHQDVVSILKELPIEVTMVCCRRTVPPTSQTELDSLDLSDIELTEKPHVDL
GEFIGSSETEESVLAMTDVGQNPEDVQAPLAMWEAGIQHIELEKGSRGLGFSILDYQNPV
DPASTVIVIRSLVPGGIAEKDGRLLPGDRLMFVNDINLENSSLEEAVEALKGAPSGTVRI
GVTKPLPLSPEEGYVSAKEDSFLYRPHSCEEQSPDKTLLRADLALVDTHGAELVDESTFE
SQYSPDNDSVYSTQASILSLHGSACSDGLNYGSSLPSSPPKDITENSSDPVLDLHMSLEE
LYAQSLLQRQDENSSSVDLNLVPTSGFTTSDYTSANATEQQYECENTIAWTESHLPSEVV
SRVELTSPVLSDSTGKGSEYLIEQSSLTSNVECVMLQNSSKESFERTITIAKGNSSLGMT
VSANKDGLGMIVRSIIHGGAISRDGRIAVGDCILSINEESTISLTNAQARAMLRRHSLIG
PDIKITYVPAEHLDEFRISLGQQSGGIMALDIFSSYTGRDIPELPEREEGEGEESELQNA
AYSNWNQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGT
LKSGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIINRPRKSPLPSLPHNLYLK
YNFSSTNPFADSLQFNADKAPSQSEPEPEKAPLCEAPPPSPSAFAEMGSDYAQSSASNIS
EDVDKEDEFGYSWKNIRERYGTLIGELHMIELEKGRSGLGLSLAGNKDRTRMSVFIVGID
PNGAAGRDGRLQIADELLEINGQILYGRSHQNASSIIKCAPSKVKIIFIRNKDAVSQMAV
CPGNTVESLPSTSENLQNKEVEPNVAISDTVVDLSSFKNVHHLELPKDQGGLGIAISEED
TLSGVIVKSLTEHGVAAKDGRLKVGDQILAVDDEVVVGYPVEKFIGLLKTAKTTVKLTIH
AENPDFQSVSPSASAANGEKKSQSLVAPQSGSPELESESIRSTSRSSTPAIFASDPATCP
IIPGCETTIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVN
GIDLRKATHDEAINVLRQTPQRVRLTLYRDEAPYKEEDVCDALTIELQKKPGKGLGLSIV
GKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTL
EVGRIKAGPFHSERRPSQSSQVSEGSLSSFTLPLSGISTSESLENSSKKNALASEIQGLR
TVEIKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHANGVAAQTQKLRVGDRIVTICGTST
EGMTHTQAVNLLKNASGSIEMQVVAGGDVSVVTGHQPEPANSSLSFTGLTSSSIFQDDLG
PPQCKSITLDRGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVN
GQSLEGVTHEEAVAILKRTKGTVTLMVLS
NT seq
6210 nt
NT seq
+upstream
nt +downstream
nt
atgttggaaaccatagacaaaaatcgggccctgcaggctgcagagcgcttgcaagtcaag
ctacgagaacgtggagatgtagcaaacgaagacaaactcagccttctcaagtcagtcctg
cagagcccactcttcagtcagattctgaaccttcagacttctgtacagcagctgaaagac
caggttagcactgcaactacagtagcttcaaatgttgaatatgcccacattcctcatctt
ggttctgctataattcctactctacaaaatgaatcatttttattgacttcaaataatggg
aatctggaagccctcactggacctggtactccacatatcaatgggaagtctgcatgtgat
gaatttgatcagttgattaaaaacatggcccagggtcgccatgtggaagtttttgagctc
ctcaaacctccatgtggaggccttgggtttagtgttgtagggctcaggagtgaaaacaga
ggagagctggggatatttgtgcaagagatacaagaaggcagtgtggcttacagagatgga
agactgaaggaaactgatcaaatccttgctatcaatggacaggcccttgatcagacaatc
acacatcagcaggctatcagcattctgcagaaggccaaagatgctgtccggctagttatc
gccagaggctccttgcctcagctcaccagccccagagtttcccgttctccatctgcagcc
agcacaatttcagctcactcgaatcccgttcactggcagcatgtagaaactattgaactg
gtgaacgatgggtctggtctgggatttggcatcataggaggaaaagcaactggtgtgata
gtcaaaaccattctgcctggaggagtagctgatcagcatgggcgattatgcagtggagac
cacattctaaagattggtgacacagatttggcaggaatgagcagtgagcaagtagcacaa
gtccttaggcaatgtggaaatagagtaaagttgatgattgcaagaggtgctatcgaggaa
actacaacacccacctctttgggtatcaccctctcttcttccccatcatctgcaccagag
atgcgggctgatgcttctactcagaaaaatgaagaaagtgagacatttgatgtggaactt
actaaaaatgtccaaggattaggaattaccattgctggttatattggggataaaaaatta
gaaccttcgggaatctttgtaaaaagcattacaaaaagcagtgctgttgaacatgatgga
agaattcaaattggagaccaaattatagcagtagatggcaccaaccttcagggtttcacc
aatcaacaagcagtagaggtgttgcgacacacaggacaaactgtgcacctaactctaatg
aggagaggaaccaagcaggaaggggagctcatatcaagggaggacatcatgaaagattct
gatgtgcctcttgttaatgccagcataaacaaagaaaattatgaaaaagatgaagattca
ttatctctgaggagaaataccagcatattacccattgaagaagaaggatatcagttgata
ccagctgaggtacaagaaacaaaagatgtgcaacaagaagctgccctgctgacaaagtgg
cagaggattatgggaatcaactatgaaatagtggtggcccatgtgagcaagtttagtgag
aatagtgggttgggaataagcctggaagcaacagtgggacatcattttatccgatctgtt
ctaccagaaggtcctgttggacacagtgggaaactcttcagtggtgatgagctgttggaa
gtgaatggcataactttgctcggggaaaatcatcaggatgtggtcagcattttaaaagaa
ttgcctatagaagtgacgatggtgtgctgtcgtcgtactgtgccacccacctcccagaca
gaattggatagcctggacctaagtgatattgaactaacagaaaagccccatgtagatcta
ggtgagttcatcgggtcctcggagacagaggagtcagttctggccatgactgatgtaggt
cagaatccagaagatgttcaagcacctttggccatgtgggaagctggcattcagcacata
gagttggagaaagggagcagaggccttggttttagcattttagattatcagaatccagtt
gatccagcaagcaccgtgattgtaattcgttccttagtgcctggtggcattgctgaaaag
gatggacgacttcttcctggagatcgcctcatgtttgtcaatgacattaacttggaaaac
agcagtcttgaagaggctgtggaagcactgaagggggcaccctcaggaactgtcagaata
ggagtgaccaagcctttacctctttcaccagaagaaggttatgtttctgctaaggaggat
tcctttctctaccggccacactcctgtgaggagcaaagccctgacaaaaccctcttgagg
gctgacttggctctggtggacacacatggtgctgaactggttgatgaatccacatttgag
tctcaatactctcctgataatgacagtgtctactctacccaagcctctattttatctctt
catggcagtgcttgcagtgatggcctgaactatggttcctccctgccatcatctcctccc
aaggatataactgaaaattcttctgatccagttcttgatctgcatatgtccttggaagaa
ctatatgcccagagtctcctgcaaagacaggacgagaattcatcttcagtagacttgaac
ctggtgcctacttctggctttaccacaagtgattatacatctgcaaatgctactgaacaa
caatatgaatgtgaaaacacaatagcttggactgaatctcacttaccaagtgaagttgta
tcaagagtagaacttacttctcctgtgctatctgattcaactggaaagggttctgagtac
ttaattgaacagagctccctgacctctaatgtggagtgtgtcatgctacagaattcatcc
aaagaatcttttgaaaggactattactatagcaaaaggcaattctagtctagggatgaca
gtaagtgctaataaagatggcttggggatgattgtacgaagcattattcatggaggtgcc
attagtcgagatggccggattgctgttggggactgcattttgtccattaatgaagaatct
accatcagtttgactaatgcccaggcacgagccatgttgagaagacattctctcattggg
cctgacataaaaattacttatgtgcctgcagaacatttggatgagttcagaataagtttg
ggacaacaatctggaggaataatggcactggatattttctcttcatacactggcagagac
attccagaactaccagagcgagaagaaggagagggagaagagagtgaacttcagaatgca
gcatacagcaattggaatcagcctaggcgggttgaactttggagagaaccaagcaaatcc
ttgggcatcagcattgttggtggacggggaatgggaagtcgcctcagcaatggtgaagtg
atgaggggcatcttcatcaagcatgttcttgaagatagtccagctggcaaaaatggaacc
ttgaaatctggagacagaatagtggaggtggatggaatggacctcagagatgcaagccat
gaacaagctgtggaagccattcggaaagcaggcaaccctgtagtctttatggtacagagc
attataaacagaccaaggaaatcccctttgccttccttgccgcacaacctttaccttaag
tacaacttcagcagcactaacccatttgctgattctctccagttcaacgctgacaaggca
cccagtcagtcagagccagagccagagaaggctccattgtgtgaagctcctccaccctct
ccttcagcatttgcagaaatgggcagtgattatgcacagtcatctgcaagcaacatctca
gaagatgtggacaaagaggatgagtttggttatagctggaaaaatatcagagagcgttat
ggaaccctaataggcgaactccatatgattgaactggagaaaggtcgtagcggtttgggt
ctaagtcttgctggaaacaaagaccgaaccagaatgagtgtctttatagtgggaattgat
ccaaatggagcagcaggaagagatggtcgactacagattgcagatgaacttctagagatc
aatggtcaaattttatatggaagaagtcatcaaaatgcctcatcaataattaaatgtgcc
ccttctaaagtaaaaataatttttatcagaaataaagatgcagtgagtcagatggctgta
tgtcctggaaatacagtagaatctttgccttctacttcagagaatcttcaaaataaggag
gtggaaccaaatgttgctatttctgatacagttgtggacctcagttcatttaaaaatgtg
caccatctggagcttcccaaggatcaaggtggtttgggcattgctatcagtgaagaggat
acactcagtggagtcatcgtaaagagtttaacagagcacggagtagcggccaaggatgga
cgactcaaagttggagatcagatcttggctgtagatgatgaagttgttgttggctatcct
gttgaaaagtttattggccttctgaagacagcaaaaacaacagtaaaactgaccattcat
gctgaaaatccggatttccagtctgtttctccatcagccagtgcagccaatggagaaaaa
aagtctcagtctcttgtggccccacagtctggctcccctgaactggaatctgaatccatc
cgaagtacaagcaggtcatcaacgccagcaatctttgcttctgatcctgcaacctgcccc
attattcctggctgcgaaacaacaattgagatttccaaagggcgaacagggctgggtctg
agcattgttgggggttctgacacattgctgggtgccattattatccatgaagtttatgaa
gaaggagcagcatgtaaagatggaagactttgggctggagatcagattttagaggtgaat
ggcattgacttgagaaaggccacacacgatgaagcaatcaacgttctgagacagacgccg
caaagagtgcgcctgacactctacagagatgaggccccctacaaagaggaggatgtgtgt
gatgccctcaccatcgagcttcagaagaagccagggaaaggcctgggattaagtattgtt
ggtaaaagaaatgatactggagtatttgtgtcagatattgtgaaaggaggcattgcagat
gctgatggaagactgatgcagggggaccagatcttaatggtgaatggagaagacgttcgt
aatgccacccaggaagctgtggctgcattgctaaagtgttccctaggcacagtaaccctg
gaagttggaagaatcaaagctggtccattccattcagagaggaggccttctcagagcagc
caggtgagtgaaggcagcttgtcatcatttactcttccactttccggaataagtacatct
gagtcattggaaaacagctcaaagaagaatgccctagcatctgaaatacagggattaaga
acagttgaaataaaaaagggacctacggactcattgggaatcagcattgctggaggagtg
ggcagcccacttggtgatgttcctatatttattgcaatgatgcatgcaaatggtgttgca
gctcagacacagaaactcagggttggggataggattgtcaccatctgtggcacatccact
gaggggatgactcacactcaagcagttaacttactgaaaaatgcctctggctccattgaa
atgcaggtggttgctgggggagatgtgagtgtggtcacaggtcatcagccggagcctgca
aattctagtctgtctttcactgggctaacatcaagcagcatatttcaggatgatttagga
cctcctcagtgtaagtctattacgctagaccgaggaccagatggcttaggctttagtata
gtgggaggatatggcagccctcatggagatttacccatatatgtgaaaacagtatttgca
aagggagcagcctcagaagatgggcgtctaaaaaggggtgatcagatcattgctgtcaat
gggcagagtctagaaggggtaacccatgaagaagccgtggccatcctcaagcggacaaaa
ggcactgtcactttgatggttctctcctga
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integrated database retrieval system
