Sciurus carolinensis (gray squirrel): 124964088
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Entry
124964088 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: dynein axonemal intermediate chain 1-like
KO
K10409
dynein axonemal intermediate chain 1
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04814
Motor proteins
ncar05014
Amyotrophic lateral sclerosis
ncar05016
Huntington disease
ncar05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
124964088
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
124964088
05016 Huntington disease
124964088
05022 Pathways of neurodegeneration - multiple diseases
124964088
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ncar03037
]
124964088
04812 Cytoskeleton proteins [BR:
ncar04812
]
124964088
Cilium and associated proteins [BR:
ncar03037
]
Motile cilia and associated proteins
Dynein arm
124964088
Cytoskeleton proteins [BR:
ncar04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Dyneins
124964088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_CDC20-Fz
WD40
Beta-prop_EML_2
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_EIPR1
EIF3I
Beta-prop_WDR75_1st
Beta-prop_TEP1_2nd
WD40_RFWD3
WD40_MABP1-WDR62_2nd
Beta-prop_LRRK2
Beta-prop_TEP1_C
DUF4191
Motif
Other DBs
NCBI-GeneID:
124964088
NCBI-ProteinID:
XP_047379959
LinkDB
All DBs
Position
14:complement(38093751..38153165)
Genome browser
AA seq
716 aa
AA seq
DB search
MPPKQPRKQSLSMGRGTRKRDEDSGTEVGEGTDEWSQSKATVRPPDQLELTDAELKEEFT
RILTANNPHAPQNIVRYSFKEGTYKLIGFVNQLAVHFSQVGNLIPKDSDEGRRQNYRAEM
VTGSQESAKVVLSDTENLEEDEEPKEAEAEAETGSQTDVPTVEAVETVTEEELITPRQPK
ERKLTNKFNFSERASQTFNNRLRDRDCQMEPPPRTNFSATANQWEIYDAYMEELEKQEKT
KEKEKTKTPVAKKTGKMAMRKLTSMESQSDDITKVTQAAKIVERMVNQNTYDDVAQDFKY
YEDAADEYRDQEGTLLPLWKFQNDKAKHLAVTALCWNPKYKDLFAVGHGSYDFMKQSRGM
LLLYSMKNPSFPEYTFSSESGIMCLDMHVDHPYLVVVGHYDGNVAIYNLKKPQSQPSFRS
TAKSGKHTDPVWQVRWQKDDMDHNLNFFSVSSDGRIVSWTLVKSELVHTDVIKLKVEGST
MEVPEGLQLHTVGCGTAFDFHKEIDYMFLVGTEEGKSTRQDVSHCGKGDVCGSEPRALSC
SKSYSSQFLDTYDAHNMAVDAVTWNPYHTKVFMSCSSDWTVKIWDHTIKTPMFIYDLNSA
VGDVAWAPYSSTVFAAVTTDGKAHVFDLAVNKYEAICNQPVVAKKKNKITHVQFNSIYPI
IIIGDDRGHVTCLKLSPNLRKMPKEKKGQEVQKGXAVEIAKLDKLLNLVREVKTKI
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgccccctaaacagcctcgtaagcagagcctcagcatgggcagaggaaccaggaagaga
gatgaagattcagggactgaagtgggagaagggacagatgaatggtcccagtccaaagcc
acagttagacctcctgaccagctggagttaactgatgcggagttaaaggaggagtttacc
cggatcctgacagccaacaacccacatgcaccccagaatattgtcaggtacagcttcaaa
gaaggcacatataagcttattggctttgtgaaccaactggcagttcactttagccaggtt
gggaacttgatccccaaagattcggatgaaggacggcggcagaactaccgtgctgagatg
gtgacaggttcacaggagtccgccaaggtggtgctttcagacacagaaaaccttgaggaa
gatgaagagcccaaggaagcagaagctgaagctgaaactgggagccaaacagatgtgcct
acagttgaagcagttgaaacagtgactgaagaagaactgataactcctaggcaacccaag
gagcgaaagctcactaacaagtttaacttcagtgagagagcctcacagaccttcaacaac
cgtctccgggatcgagattgccagatggagcctcctcccaggacaaacttttcagccaca
gccaatcagtgggagatttatgatgcctacatggaggagcttgagaagcaggaaaagacc
aaagagaaggagaagacaaaaaccccagtggctaaaaagacagggaagatggccatgagg
aagctgacatctatggaatcccagagtgatgatatcaccaaagtgacccaagcagctaaa
attgtagagcggatggtcaatcagaatacatatgatgatgttgctcaagattttaagtac
tatgaggatgctgctgacgaataccgggaccaggagggtacactgctgccgctctggaag
ttccaaaacgacaaagccaagcacctggccgtcaccgccctctgctggaatccaaagtac
aaggatctgtttgcagtgggacatggctcctatgactttatgaagcagagcaggggcatg
ctgctgctctacagcatgaagaatcccagcttccctgaatacaccttcagcagtgagagc
ggcatcatgtgtcttgacatgcacgtggaccatccctatctagtggtggtgggccactat
gacggtaatgtggccatttacaacctcaagaagccccagtcccagccttccttccgcagc
acagccaagtctggcaagcacacggaccctgtatggcaggtcaggtggcagaaggacgac
atggaccacaaccttaacttcttctctgtgtcatctgatggcaggatcgtgtcttggacg
cttgtgaagagtgagctggttcacacagatgtcatcaagctgaaggtggagggcagcact
atggaagttcctgaggggctgcagctacacacagtgggctgtggtaccgcctttgacttc
cacaaagagattgactacatgttcctagtgggcacagaggaaggaaaatctacaaggcag
gatgtttctcactgtggcaagggtgatgtctgcggcagtgaacccagagctctgtcatgc
tctaaatcctattctagtcaattccttgatacctatgatgcccacaatatggcagtggat
gctgtgacctggaacccataccacaccaaggtcttcatgtcctgcagctctgactggaca
gtgaagatctgggaccataccatcaagacccccatgttcatctatgacctgaactcagct
gtgggtgatgtggcctgggcaccatactcttccactgtgtttgcagcagtcactacagat
gggaaggcccatgtgtttgacttggctgtcaacaagtatgaggccatctgcaaccaaccc
gtggtggccaaaaagaagaacaagatcacccacgtgcagttcaactccatctacccaatc
atcatcattggtgatgaccgtgggcatgtcacctgcctcaagctctcacccaacttacgc
aagatgccaaaggaaaagaagggccaggaagtgcagaagggtncagctgtggagatcgca
aaattggacaaactgctgaacctggtgagggaagtgaaaaccaagatctaa
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