Sciurus carolinensis (gray squirrel): 124964199
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Entry
124964199 CDS
T08117
Name
(RefSeq) collagen alpha-1(XXVII) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04820
Cytoskeleton in muscle cells
ncar04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
124964199
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
124964199
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ncar00536
]
124964199
Glycosaminoglycan binding proteins [BR:
ncar00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124964199
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
124964199
NCBI-ProteinID:
XP_047380038
LinkDB
All DBs
Position
14:complement(19814883..19942494)
Genome browser
AA seq
1851 aa
AA seq
DB search
MGAGSARGAQGTAAAAARGGGFLLAWILVSSACHLASTQGAPEDVDVLQQLGLSWTKAGG
GRSPVPPGVIPFQSGFIFTQRARLQAPTAALVPAALGPELALVLSLCSHRVNHAFLFAIR
GRRRELQLGLQFLPGKTVVHLGPRRSVAFDLDVHDGRWHHLALELRGRTVTLVTACGQRR
VPVPLPFRRDPMLDPQGTFLFGKMSPHAVQFEGALCQFSIHPVTRVTHNYCAHLRKQCGQ
ADVDWPQLRPLYPRDSSRPFTFQSGLALLGLQNLTTATPALGSRPAGRGPTVTVAPARPT
QPQRTSPTDPHQHVPVGGPAQTPLPPAKGSGSKAPPGLSPAPLAGSTRTLPAASQPLPVP
ATQVPQSLSAKPSVLSPSVAPEKSPHPTQKTALPSSTKPAPPSQKLVPPTSRPAPVRVPH
PTAKQAQRIPATPRPPAPRARPPTPAAVSKKSVSTVAQAEAQPASQAGRPASAHPAAHRP
PRPTSPGPPGAARPPATTVAPVLGTGTPRPAPPTRTPGSVSTRSQKPTGSEPSKKAGSKS
GPQKPVPLRPGKAAGDVLLKDPTTRASPSQSLPGEQTGPALVSAPSGVLSPSAPPSSGGH
AFVHLAGPTPLPLLRGPPGPKGDCGLPGPPGLPGLPGPPGTRGPRGPPGPYGNPGLPGPP
GAKGQKGDPGLSPGKALDGAKGDMGLPGLSGNPGPLGRKGYKGHPGPAGHPGEQGPPGPE
GSPGAKGYPGRQGLPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVPGKRGKMGRP
GFPGDFGERGPPGLDGNPGELGLPGPPGVPGLIGDMGALGPIGYPGPKGMKGLMGSVGEP
GLKGDKGEQGVPGVSGDPGFQGDKGSQGLPGFPGARGKPGPLGRAGDKGSLGFPGPPGPE
GFPGDIGPPGDNGPEGEKGKPGARGLPGPRGQLGPEGDEGPMGPPGTPGLEGQPGRKGFP
GRPGPDGVKGEPGDPGRPGPVGEQGLLGFIGLVGEPGIVGEKGDRGEMGPPGAPGPKGSM
GHPGMPGGVGIPGEPGPPGPPGSRGLPGMRGPKGRRGPRGPDGPAGEPGTRGLKGPAGPR
GRPGQPGQQGAAGERGHLGPRGFLGIPGPSGPPGTKGLPGEPGPQGPQGPVGPLGEMGPK
GPPGAVGEPGLPGEAGMKGDLGPLGTPGEQGLVGQRGEPGLEGDGGPAGPDGLKGDRGDP
GPDGERGEKGQEGLKGEDGPPGPPGVTGVRGPEGKPGKQGDKGRTGAKGAKGYQGQLGEM
GVPGDPGSPGTPGPKGSRGSLGPTGAPGRMGVQGEPGLAGYDGHKGIVGPLGPPGPKGEK
GEQGEDGKAEGPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQPGHPGP
RGRPGPRGSKGEEGPKGKPGKAGAPGRRGIQGLQGLPGPRGVVGRQGPEGVAGPDGLPGR
DGRAGPQGEQGDDGDPGPVGPAGRRGNPGVAGLPGAQGPPGFKGENGLPGQLGPPGKRGT
EGGTGLPGKQGEPGSKGQPGDTGEMGFPGVSGLFGPKGPPGDIGFKGIQGPRGPPGLMGK
EGIIGPLGILGPSGLPGPKGDKGSRGDWGLQGPRGPPGPRGRPGPPGPPGRPIQFQQDDL
GAAFQTWMDTNGALRPEGYSYPDRLVLDQGGEIFKTLHYLSNLIQSIKTPLGTKENPARV
CRDLMDCEQKMADGTYWVDPNLGCSSDTIEVSCNFTHGGQTCLKPITASKVEFAVSRVQM
NFLHLLSSEVTQHITIHCLNMTVWQETSGRTPAKQAVRFRAWNGQIFEAGGQFRPEVSVD
GCKVHDGRWHQTLFTFRTQDPHQLPIVSVDNLPPASSGKQYRLEVGPACFL
NT seq
5556 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgggatccgcgcggggggcccaaggcacagcagcggcggcggcacgcgggggg
gggtttctcttggcctggatcttagtctcgtctgcctgtcacctggcctccacccaagga
gctcctgaagatgtggacgtcctgcagcagctgggcctcagctggacaaaggccggaggt
ggccggagccccgtgcccccgggagtcatcccgttccagtcgggcttcatcttcacgcag
agggcgcggctgcaggcccccacggctgccctggtgcccgccgccctgggcccggagctg
gctctggtgctgagtctctgctcgcaccgggtgaaccacgccttcctctttgccatccgc
ggccgcaggcgtgagctgcagctgggcctgcagttcctccccggcaagaccgtggtccac
ctggggccccggcgctccgtggccttcgacctggacgtgcacgacggtcgctggcaccac
ctggccctcgagctccgtggccgcacggtcactctggtgacggcctgcgggcagcgccgg
gtgcctgtcccgctgccgttccgcagggatcccatgctcgaccctcagggcaccttcctc
tttgggaagatgagcccacatgctgtccagttcgaaggtgccctctgccagttcagcatc
cacccggtgacacgggtcactcacaattactgcgcccacctgaggaagcagtgtggacag
gctgatgtggactggccccagctgcggcccctctatccccgagactccagccgacccttc
accttccagagtggcctggccctgctaggcctgcagaacttgaccactgccacacctgcc
ttggggtcacggccagcaggcagggggcccacagtgacagtggctcctgccaggcccacc
cagccccaacggacgagccccacagatcctcaccagcatgtcccagtgggaggtccagcc
cagaccccactgccacctgccaaagggtcaggcagcaaagcccctcctggattgtccccc
gcccctttggctggctccaccagaactcttcctgcagcttcccaaccattgccagtccca
gccacccaagtccctcaaagtctctccgccaagccttccgtcctttctccttcagtcgcc
cctgagaaaagccctcatcctacccagaaaacggctctgccttcatccacaaagccggct
ccacccagccagaagttggtgccacccacttcccgcccagcgcctgtcagagttccccat
cccaccgcgaagcaggcccagaggatcccggccacgccccgacctccagccccccgtgcc
cggcccccgactcccgccgccgtctctaaaaagtcggtttccacagtagcccaggccgag
gcccagccagccagccaggccgggaggccagcctctgcccaccccgccgcccacagacct
ccccggcccaccagccctggccctcccggagcggctcggccaccagccacgacggtggct
ccagtcctgggcactggaactcccagacccgcaccccctactcgcactcctggttcagtc
tccaccagaagccagaaacccactggatcggaaccctccaagaaagccggatccaagagc
gggccccagaagcccgtccccctcagacctgggaaggcagctggcgatgtcctgttgaag
gacccgaccaccagggccagtcccagccagtccctgcccggggagcagaccggcccggcc
ctggtctcagccccttcaggagtcctgtcccccagtgccccgccctcgagtggcggacat
gccttcgtccacctggcaggacccacaccgctccccctgctgagggggcctccagggccc
aagggagactgtggcttgccgggtccccctgggctgcctgggctgcctggacctcctggc
acacgggggcctcggggtcctcctgggccgtatggaaacccaggcctgcccggccctcct
ggagccaaaggacagaaaggggacccagggctctcaccaggaaaggccctcgatggggca
aagggcgacatgggcttgcctggactctccggcaatccaggacccctcggaagaaaggga
tacaagggccatcctggaccggcaggccaccccggagagcaggggccgccaggacctgag
ggcagcccaggggccaaaggttaccctggcaggcaggggctacctgggcctgtaggagac
cctggccccaaaggcagccggggctacattggactcccggggctcttcggcctgcccggg
tccgacggggagcggggtctgcctggcgttcctggcaagaggggcaagatgggtaggccg
gggttccctggagactttggggagagaggcccccctggactcgatggaaaccccggagag
ctgggcctgccagggcctccaggagtccccggcctcatcggtgacatgggagcactgggt
ccgatcggctacccgggacccaagggcatgaagggactgatgggcagcgtgggggagccc
ggactgaaaggtgataagggcgaacaaggggtcccaggtgtgtccggagatcccggcttc
caaggagacaagggcagccaggggttgccagggttcccgggtgcacgggggaagcccggg
cctctgggcagagctggagacaaaggctccctggggtttcctgggccccctggacccgag
ggcttccccggagacatcggcccccctggggacaacggcccggaaggcgagaagggaaag
cctggagctcgaggcctgccgggaccccgaggacagctggggcccgagggagatgaggga
cccatggggccaccaggaacccctggcttggagggtcaacctggcaggaagggatttcct
gggaggcccggccccgatggtgtgaagggggaaccaggagatcctgggcgaccggggccc
gtgggcgagcagggtcttctgggattcattggtctggtcggggagccaggaatcgtggga
gaaaagggtgaccgtggcgagatgggacccccaggcgcacccggacccaaggggtcgatg
ggtcatcctggaatgccaggtggtgttgggatccccggagagcctggacccccgggtcct
ccaggatctcgaggcctgccaggcatgaggggacctaagggacgccggggccccagagga
ccagatggaccagctggggagccggggaccaggggcctgaagggccctgccggacctcgg
ggcagacccggccagcctggacagcagggcgcggctggcgagcgaggtcacttgggccca
cgaggcttcctcggcatcccaggtccctcaggccccccaggcaccaagggcctcccagga
gaaccgggccctcaggggccccagggaccagtgggccccctgggagagatgggacccaag
gggccaccaggtgcagtgggagaaccaggccttcctggggaagccgggatgaagggcgac
cttggacccctgggcacccctggggagcagggcctcgttgggcagcggggggagccaggc
ctcgagggtgacggtggccccgcagggcccgacgggctaaagggggacagaggtgaccca
gggcccgatggtgagcgtggtgagaaaggccaggaagggctgaagggcgaggacgggccc
ccggggcctcctggcgtcaccggtgtccggggtcctgaaggaaaaccagggaagcaaggc
gacaagggccggacgggggccaagggtgccaagggctaccaaggacagctgggcgagatg
ggtgtccccggagacccaggatcccctggcaccccaggtcctaaaggctcccggggcagc
ctgggcccaacgggtgctccaggtcggatgggggtccaaggagagccaggactggctggt
tatgatggacacaaaggcattgtaggaccccttgggcctcctggacccaaaggtgaaaag
ggtgagcagggtgaggacggcaaggccgaggggccccctgggccgcctggagatcggggc
cctgtgggtgaccgaggagaccgtggtgagcctggggacccaggataccctggacaggag
ggtgttcaaggcctccgtggaaagcccggccagcagggccaacccgggcatccgggaccc
cgggggcggccgggacccagaggatcaaaaggcgaagagggcccgaagggaaagccgggc
aaggccggggccccaggtcgcagggggatccaggggctgcaggggctgccggggcctcgg
ggcgtggtgggaagacagggcccggagggtgttgctggaccagatggacttcctggcagg
gacggccgagcaggaccgcagggtgagcagggagatgacggggaccctggccctgtgggc
cctgctgggaggagaggaaatcccggtgtggccggcttgcctggagcacagggacccccg
ggattcaagggtgaaaatgggttacctgggcagctgggtccccctggcaagcgaggaact
gagggcggaacggggcttcctgggaagcagggggagccaggatccaaaggccagccgggt
gacactggagagatgggcttcccaggagtgtccggcctctttggacccaagggccccccg
ggagacatcggcttcaaaggcatccagggccctcggggccctcctggcttgatgggaaag
gagggcatcattgggcccctcggaatcctgggaccgtcaggactcccgggtccgaagggc
gacaaaggcagtcgaggggactggggactacagggtccgaggggtcctcccggcccaaga
gggcggcctggcccaccgggacctccagggcgccctatccagtttcaacaagatgacctt
ggggcagctttccagacgtggatggacactaatggagcgctcagaccagagggctacagc
tatccagaccggctggtgctggaccagggaggggagatcttcaaaaccttacactacctc
agcaacctcatccagagcattaagacacccctgggcaccaaggagaaccccgcccgggtc
tgccgggacctcatggactgtgagcagaagatggcggatggcacctactgggtggatccg
aatctcggctgctcctctgacaccattgaagtctcctgcaacttcacacacggtggacag
acgtgtctgaagcccatcacggcctccaaggtggagtttgccgtcagccgggtccagatg
aacttcctgcacctgctgagctccgaggtgacccagcacatcaccatccactgcctgaac
atgaccgtgtggcaggagacctcggggcgcaccccagccaagcaggccgtgcgcttccgg
gcctggaacgggcagatctttgaagctgggggccagttcaggccggaggtgtccgtggac
ggctgtaaggtccacgacggccgctggcaccagacgctcttcaccttccggacgcaggac
ccccatcagctgcccatcgtcagtgtggacaacctccctcctgcctcatcagggaagcag
taccgcctcgaagttggacccgcgtgcttcctctga
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