Sciurus carolinensis (gray squirrel): 124964254
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Entry
124964254 CDS
T08117
Name
(RefSeq) protein transport protein Sec16A-like isoform X1
KO
K20353
COPII coat assembly protein SEC16
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncar04131
]
124964254
Membrane trafficking [BR:
ncar04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
124964254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
Motif
Other DBs
NCBI-GeneID:
124964254
NCBI-ProteinID:
XP_047380170
LinkDB
All DBs
Position
14:1229314..1263515
Genome browser
AA seq
2385 aa
AA seq
DB search
MLFLSDARDEAHLRVIQAQIKKKLCSAFSVSSITLCKRSIMQPPPQAVPSGVTGPPPPGN
PRSMFWANSPHRRPASNNIPVAPITCPLQPVTDPFAFSRQTLQNTPLGNSSKSNLPVLQS
PALPAFSQWPGLPVPHTNAGDNSQGPYEPLPGPLSQPRADASLFPIASISLSLPGPEMNR
NAEVGATSEPEVQTLPHPPHYIPGVGPDQSHGGHVHGSGPGPDQPLNRRTPQDGAMAPAA
SPSFSQPHPQMPGQGGPVWGSPQPSHQHHSPSPAGLIQSMGPQASSAPHFPAPSSLHHGL
GHESHSPLVPPPEPLAGGGGNEAAHLSSGNHSASNFHPEHAQRQNSRSRSTWTSQEFRQN
PAAKKELLPDPAIINPLTQGNSPENHVHYPPAAGTSRPPPEAGPGALSMFFQGEETENEE
NLSSEKASSTGRSGFDDFSPSPGLAQPPPSAHAASGTYQTFPKGPSTEAAQQEGDTQSYF
SHSAGIQHDKQTSKSVAPMAWGDTDSAGAHEAGSSRYENVENLEFIQNQEVLPSEPPSLD
PSSPSDQFRHRPLPGQAVPRHSAVGLTRGGGLNHEAPEAPLHPTRSDSVSSSYSSQSHRS
LPGSTRSQEPVGTFIQQEVGKPERETAGGFFKQIDSSPVGGETDETTGSQNYHRSLSQPS
TPSPPKPTGIFQTSVNSSFEPVKSHLVGVKPVEADRANVVGEVRGSRDCQKKRRPSAAPS
DSSPGNLEQPPDNMETLFAPHPCPLPLTTTTEAGYVLSHTGGPPLDAGRPTPEKRPSARA
QGTTKCESPATTLWAQDELPDFGGNVLLAPAAPALYVPAKPQLSAVVQPPKEGVSVQQLR
KPASARAVQSRVGLGASENLENPPKVGDDETLQSQASSGYASLLSSPPTESLQNQPVLIA
QPDQSYNLAQPINFSVSSLNPNEKNQSWGDALVADKSTVSGQSLGSDSGEYAALSRVPTS
AVTALSLPNSVAQCNVPLGSGSSEMVVNQPANLLVQPPPHPVPKSVLPEGQKNHSAAKVL
PEFVSRPAGSTGAMSVPPTHGTSVSGSDEANSSSNREETIGALDFTLSGALGNPIRVYSP
SHPDGPASLQAIASHPRQSGPGAHNPDRFYQQVTKDAQDQPGIERAQPELVPPQPQASPQ
QVPQVSFPEPSNPESPSIQGQSRNSAQPPASPALAETGQKVPPRPPQSSSASAMSTSSSQ
AAMRSEQSWLHPPASAFGPPPQDLASYYYYRPLYDACPPQYPSPYPPDPGTASLYYQDMY
GLYEPRYRPYDSSAPAYAENYRYSEPERPSSRASHCSDRPTPRQGYPEGYYNSKSGWSSQ
SDYYANYYSGQYDYGDPGRWDRYYGSRFRDPRTWDRRYWYDAEYDPHRKESYAYGDRPEK
FDDHWRYDPRFTGSFDDDTEPPRDPYGEEVDRRSVHSEHSARSLHSTHSLPSRRSSLSSH
SHQSQIYRSHNVTTGSFEVPPPPGSFHGDYAYGTYSSNFGSAHGFPEYGYPADTSWPAVD
QVPSRPTSPEKFSVPHICARFGPGGQLIKVIPNLPSEGQPALVEIHSMETLLQHTPEQEE
LRSFPGPLGKDDTHKVDVINFAQNKATKCLQNESLMDKESASLLWNLIILLCRQNGTVVG
TDIAELLLRDHRTVWLPGKSPNEANLIDFTNEAVEQVQEEESGEAQLSFLTDSQSASTST
LEKETERFRELLLYGRKKDALESAMKNGLWGHALLLASKMDSRTHARVMTRFANSLPIND
PLQTVYQLMSGRMPAASTCCGDEKWGDWRPHLAMVLSNLNNNMDVESRTMATMGDTLASK
GLLDAAHFCYLMAQVGFGVYTKKTTKLVLIGSNHSLPFLKFATNEAIQRTEAYEYAQSLG
AQTSALPNFQVFKFIYSCRLAEMGLATQAFHYCEVIAKSILTQPAAYSAVLISQLVQMAS
QLRLFDPQLREKPEEESFVEPAWLVQLQRVERQIQEGAVPRNQDGADPQECPSTPGSEVD
QSDAPVRGQPMGLGADQPLLMPSAECSSQGTQLLASAPQMLPDGQLAHPARVPMFPVSPP
SGALESGPGCGPPVSAVGFPELSRPDPAALCTGLGLPPGVSSLQERDSLLQETRSLDPGM
VPEDSPVRKVLPEPSEEDFGGSFADLGSSRTAQDAETSPAWDHATSDSAQSALSLTPAPE
TKRPTQVARKETKETKKSESWFSRWLPVKKRTEAYLPDDKNKSIVWDEKKNQWVNLNEPE
EEKKAPPPPPISLPRTSQVAHPGSTGPPTASVNMFSRKAGGSRARYVDVLNPNGTSRGEP
APAPADFFAPLAPLPIPSNLFTPSPDAEEPHLAEGAGRVGPEPAGAQANPEPVPEPKAPS
DHCPAGDPLSGTVPLYSPSQLAQASISSGSSRPGRIGQRKYPALN
NT seq
7158 nt
NT seq
+upstream
nt +downstream
nt
atgcttttcctcagcgatgctcgggatgaggcacatttacgtgtgatccaagctcaaatt
aagaaaaagctctgctctgccttctctgtaagcagcatcaccttgtgcaagaggtccatt
atgcagccaccaccccaggcagttccgtctggggtgactggaccacctccgcctgggaat
cctcggagcatgttctgggctaacagccctcacaggaggccagccagtaataacatacca
gtggctccgataacttgcccattgcagccagtaacagatccgtttgcttttagtagacag
acactccagaatacaccattgggcaattcatccaaaagtaacctacctgttttgcaaagc
ccggccctcccagcattttctcaatggcctggtttgcctgtgcctcacacaaatgctggg
gataattcccaaggaccgtatgagcctctgccaggacctctgtcacagcctagggcagat
gccagtctgtttcctattgcatccatctctttgtcgctgcctgggcctgagatgaacagg
aatgcagaggttggcgccacctcagagcctgaagttcagactctgccacatccacctcat
tacattccaggagtgggtcctgaccagtctcacgggggccatgtgcatggcagtggacct
ggacctgatcagcccttgaataggcgtaccccacaagatggtgcaatggccccagcagca
tccccttcattctcccagcctcatccacagatgccaggtcagggggggccagtgtgggga
agcccacagccctcccatcagcaccactccccctcgccagcaggacttattcagagcatg
ggacctcaggcttccagtgctccccatttccctgctccttccagtctacaccatggtctt
ggccacgagtcccatagcccactcgtgcctcctccagaacctttggctggtggcggaggg
aacgaggcagcccacctgtccagtggaaaccactcagcaagtaacttccatcctgagcat
gcacagaggcagaattccagaagcaggagtacatggacaagccaggagttcagacagaat
ccagcagcgaaaaaagaacttttgccagaccctgccattatcaatcctctcactcaggga
aatagccccgaaaaccatgtgcactatccccctgcggctgggactagccggcccccccca
gaagcaggcccaggagctctctctatgtttttccaaggggaggagacagaaaatgaagag
aatctctcatctgaaaaagcaagctccacgggcaggtcgggctttgacgatttctccccc
agccctggactggcccagccaccgccctctgcacacgcagctagtggcacctaccagacc
tttcccaaaggccccagcactgaggctgcacagcaggaaggagacacacaatcatatttt
tctcactctgcaggtatccagcatgataagcaaaccagtaaaagtgttgctcctatggcc
tggggtgacacagacagtgctggggctcatgaggctggcagctcacggtatgagaatgtt
gagaacttagaattcattcagaatcaagaggttctgccaagtgagcccccaagtttggat
ccttcctctcccagtgaccaattccgacacaggccccttcctggacaagctgtccccagg
cacagtgctgtgggcctcaccagaggtggggggctgaatcatgaggcccccgaggcaccg
ctgcatcccacgcgatctgacagtgtgtcatccagctatagcagccaaagccacaggagt
cttccagggtcaaccagatcacaagaaccagtgggcacgttcattcaacaagaagtagga
aaacctgaacgtgaaactgcagggggcttttttaagcaaatcgattcttctcctgtagga
ggtgagacagatgagaccactggaagccagaattaccataggagcttgtcccagccctca
accccaagtcctccaaaacctacagggatatttcagacgagtgtaaatagttcttttgaa
ccagtaaaatcccacttagttggggtaaaaccagttgaggcagatcgtgccaatgtggta
ggtgaagtgagggggagtcgtgattgccagaagaagcgtagaccctctgctgcaccatct
gattcctccccaggtaacctggagcagccgccagacaatatggagacactgtttgcaccc
cacccttgccctctgcctcttaccaccaccactgaagctgggtatgtactttcgcacaca
gggggtccacctttggatgctgggcgcccaacacctgagaagaggccctcagccagggcc
caggggaccacaaaatgtgagagcccagcaacgactttgtgggcacaagatgagctgcca
gattttggtggcaatgtccttctagcccctgctgctcctgcactttatgtacctgcaaaa
cctcagctgtcggcagttgtgcagcctccaaaagagggggtgtccgtgcagcagctgcgg
aagccagcctctgcccgtgctgtgcagagccgagttggccttggtgcctctgagaacctt
gagaacccaccaaaggtgggggatgacgaaaccctgcagtcacaggcgagttctggttat
gcaagtttactgtcctcaccacccactgagtctctgcagaatcagcctgtcttgatcgcc
cagcctgatcaaagctataatttggctcagcccattaatttttctgtgtcctcactgaat
cctaatgagaagaatcagtcctggggagatgctttggtggcagataaatccacagtaagc
ggccagtctctcggcagtgattctggagaatatgctgctttgtccagggttccaacgagt
gctgtcactgccttgtctctgccgaatagtgttgcccagtgtaatgtcccacttggttct
gggtcttctgaaatggttgttaatcagcctgccaatttgctggttcagccaccaccccat
ccagttccaaagagtgtgcttccagaaggtcagaagaatcatagtgcagcaaaggtcctt
cccgagtttgtcagcagacctgctggaagcacaggcgccatgtcagttccacccactcat
ggtacttcggtgtctggtagtgacgaggcaaattcctccagtaaccgggaagaaacgatt
ggagccttagactttaccttaagtggagctttgggaaatcctataagagtgtacagccca
tcccatcctgatggcccagcttcactgcaagccattgccagtcatcccagacaatctgga
cctggggctcataacccggatcgtttctatcagcaggtgacaaaagatgcgcaggaccaa
cctggcatagagagagcccagccagagctggtgccacctcagccccaggcttctccccag
caagtgccgcaggtatcatttccagaaccttcaaatccagaaagtccgtccatacaaggc
cagtccagaaactcagcccagccaccagcaagcccagccttggctgaaacgggtcagaag
gtgcctcctcggccacctcagtcctccagtgcatcagccatgtccaccagctcaagtcag
gcagccatgcgttcagagcagtcatggctacacccacccgcaagtgcgtttggcccacca
cctcaggacctcgcttcctactactactacaggccactgtatgatgcctgcccgcctcag
tacccctcaccctacccgccagatcctgggacggcctccctctattaccaggacatgtac
ggcctgtatgaacctcgatacaggccctatgacagctcagcacctgcttatgctgagaac
taccgctactccgaacctgagcggcccagctcccgagcaagtcactgctccgaccggccc
actcccaggcaagggtatcctgaagggtactataattccaagagtggatggagcagtcag
agtgattactatgcaaattactactccggccagtatgattatggagacccaggtcgctgg
gatcgctactacggttctagattcagggatccccgcacttgggaccggaggtactggtat
gatgctgagtacgacccacacaggaaggaaagctatgcttatggcgacaggcctgagaaa
ttcgatgaccactggaggtacgaccctcgcttcacagggagctttgatgatgacactgag
ccccccagagacccttatggggaggaggtggacaggcgcagcgtccacagtgagcactca
gcacggagcctgcacagcacacacagtctgcccagccgccgcagcagcctcagttcccat
tcacaccagagtcagatttacagaagccacaatgtgactactggttccttcgaggtcccg
cctcccccaggctcctttcatggtgattatgcctacggcacctacagcagcaatttcggc
agtgcccatggctttccagagtatggctaccccgcggacaccagctggcctgctgtggat
caagttccatcaagaccaacttctcctgaaaagttctcagtgcctcacatctgtgccagg
tttggtcctggtggccaactcattaaagtgatccccaacctgccttcagaaggacagcct
gcactggtggagatccacagcatggagaccttgctgcagcacacgcctgagcaggaggag
ctgcgctcattcccagggcctcttggcaaagatgatacccataaagtggatgttattaat
tttgcccagaacaaggctacaaaatgtttgcagaatgaaagtctaatggacaaagagtct
gcaagtctcctttggaacctcatcattctactgtgcagacagaacgggaccgtggtggga
acggacattgcagagcttctgttgcgcgaccacaggacagtgtggctcccagggaagtca
cccaacgaagctaacctgatagacttcactaatgaggctgtggagcaggtgcaggaggag
gagtctggtgaggcccagctctcctttctcacggacagtcaaagtgccagcaccagcacg
ctggagaaggaaacagagaggttccgagagctgctactctatggccgcaagaaggatgct
ttagagtctgcaatgaaaaacggattgtggggtcatgctctgctacttgcgagtaagatg
gatagccgaacacacgcccgtgtcatgaccaggtttgccaacagccttcccatcaatgac
cctctgcagaccgtctaccagctcatgtctgggcggatgcccgctgcatccacgtgttgt
ggggacgagaagtggggagattggaggccacatcttgccatggttttgtccaacttgaat
aacaacatggacgtcgagtccaggaccatggctacgatgggcgataccctagcctcaaaa
ggcctcttagatgctgcacacttctgctaccttatggcccaggttggatttggggtttat
acaaagaaaactacaaaacttgtcttgattggatcaaaccacagtttgccatttttaaag
tttgccacaaatgaggctatccagaggacagaagcctatgaatatgcccagtcgcttggg
gcccagaccagcgccttacctaatttccaggtgtttaagttcatctactcctgccgcctg
gctgagatgggtctcgccacacaggccttccactactgtgaggtgatcgccaagagcatc
ctgacacagcctgccgcgtattctgcggtgctcatcagccagctggtccagatggcttcc
cagttgcgcctctttgatcctcagctgagggagaaaccagaggaggagtcctttgtggag
cctgcttggctggtgcagctgcagcgtgtggagaggcagatccaggagggtgctgtgcca
cggaatcaggacggagccgacccccaggagtgccccagcactccaggctctgaggtggac
cagtcggatgccccagtgcgtggccagccaatggggctgggtgctgaccagcccctgttg
atgccgagtgccgagtgctccagccagggcacacagctgctggcctcagctccacagatg
ctccctgatggccaactagcccaccctgccagggtgccaatgttcccagtgtcaccaccc
tcaggagctctggagtcgggtcctggctgtggacccccagtgtctgcagttggcttccca
gagctctccaggcctgatcctgcagctttgtgtacggggcttggtctgccacctggtgtg
tcatctctccaggaaagggactccctgctacaggagaccaggagcctggacccaggaatg
gtgccagaggactcgcctgtcaggaaggtgcttcccgagccgagtgaagaggacttcggt
ggaagctttgctgacttgggctcctctaggacagcgcaggatgcagaaacttccccagcc
tgggatcatgccacctcagactcagcacagtctgctttatctctgacacctgctcctgaa
acaaagcggcctacacaagtagccagaaaggagaccaaagaaaccaagaagagtgagtcc
tggttctctcgttggctacctgtgaaaaaaaggacagaagcttacttgccagacgacaag
aacaaatcgattgtttgggatgaaaagaagaaccagtgggtgaatttgaatgagccagag
gaggagaagaaggctccacccccacctccaatatcactgcccaggacttcgcaggtggct
caccctgggtctacagggcctcccacagcctccgtgaacatgttttctagaaaagcaggc
ggatccagagctcgctatgtggacgtgttgaatccgaatgggacctcgcggggtgagcca
gctcctgctcctgcggatttcttcgctccacttgctcccttgccaattccttctaacctg
ttcacaccaagcccagatgcagaggaaccacatcttgcagaaggagctggcagggtggga
ccagagccagctggggctcaggccaatccagagcctgtcccagaacccaaggctcccagt
gaccactgccctgcaggggaccctcttagcggaactgtgcccttgtacagcccttcccag
ttggcacaggcctccatcagctcgggtagctcaaggccagggaggattggccagaggaag
tacccagcattgaactag
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integrated database retrieval system
