Sciurus carolinensis (gray squirrel): 124964306
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Entry
124964306 CDS
T08117
Name
(RefSeq) nuclear cap-binding protein subunit 1 isoform X1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03013
Nucleocytoplasmic transport
ncar03015
mRNA surveillance pathway
ncar03040
Spliceosome
ncar05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124964306
09122 Translation
03013 Nucleocytoplasmic transport
124964306
03015 mRNA surveillance pathway
124964306
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
124964306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124964306
03041 Spliceosome [BR:
ncar03041
]
124964306
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
124964306
Spliceosome [BR:
ncar03041
]
Common components
Common spliceosomal components
Cap binding complex
124964306
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G
MIF4G_like
Cob_adeno_trans
DUF2524
Motif
Other DBs
NCBI-GeneID:
124964306
NCBI-ProteinID:
XP_047380300
LinkDB
All DBs
Position
14:complement(34205975..34244352)
Genome browser
AA seq
790 aa
AA seq
DB search
MSRRRHSDENDGGQPHKRRKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEAD
LPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANN
YNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWV
GKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLK
KDCWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEG
PVMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELF
QLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHH
LSNFQFRWSWEDWSDCLTQDLESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPAN
PTCIYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFN
PLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQM
IAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELE
EAKEKLARQHKRRSDDDDRSSDRKDGALEEQIERLQEKVESAQSEQKNLFLVIFQRFIMI
LTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILA
VFQQFCALQA
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggcggcggcacagcgacgagaacgatggtggacagccacacaaaaggagaaag
acttctgatgcaaatgaaactgaagatcatttggaatctttaatatgcaaagtaggagaa
aagagtgcctgctctttggagagcaacttagaaggcttggctggtgttttggaagccgat
cttcctaactacaagagcaagatcttaagacttctttgtacagttgcacgtctgttacct
gagaagctgacaatttatacaacattagttggactgctaaatgccaggaattacaacttt
ggaggagaatttgtagaagccatgattcgtcaacttaaagaatcattgaaagcaaacaat
tataatgaagctgtatatttggtccgttttttatctgatcttgtgaattgtcatgtgatt
gctgccccatcaatggttgccatgtttgaaaattttgtaagtgtaactcaggaagaagat
gtgcctcaggtgcgacgggattggtatgtgtatgcatttctgtcatctttgccctgggtt
ggaaaggagttgtacgaaaagaaagatgcagagatggaccgcatctttgccaacactgaa
agctatcttaagagacgccaaaagactcatgtgcccatgttacaggtttggactgctgat
aaaccacatccacaagaagagtatttagattgcctgtgggcccagattcagaaattgaaa
aaggattgctggcaggaacggcacatcctaagaccttatcttgcctttgatagcatcctc
tgtgaagcattacagcacaatctgcctccttttacaccacctcctcacactgaggattca
gtgtacccaatgccaagggtcatcttcagaatgttcgattacacagatgatcctgagggt
cctgttatgccagggagtcattcagtggagagatttgttatagaagagaatcttcactgt
atcattaagtcccactggaaggaaaggaagacttgtgctgcacaactagtgagctatcca
gggaagaacaagatccccttgaattatcacatagtggaggtgatcttcgcagaactattt
caacttccagcaccccctcacattgacgtgatgtacacaacacttctcattgaactgtgc
aaacttcagcctggctccctaccccaagttcttgcacaggcaactgaaatgctatacatg
cgtttggacacaatgaatactacatgtgtagacaggtttattaattggttttctcatcat
ctaagtaactttcagttccgctggagctgggaagattggtcagattgtcttactcaagat
cttgaaagtcccaaaccaaagtttgtaagagaagttctagaaaaatgtatgaggttgtct
taccatcagcgtatattagatattgttcctcctaccttctcagctctatgtcctgcaaac
ccaacctgcatttacaagtatggagatgaaagtagcaattctcttcctggacattccgtg
gccctctgtttagctgttgcctttaaaagtaaagcaaccaatgatgaaatcttcagcatt
ttgaaagatgtaccaaatcctaaccaggatgatgatgatgatgaaggatttagttttaac
ccattgaaaatagaggtctttgtacagactctgctacatttggcagccaaatcattcagc
cactccttcagtgctcttgcaaagtttcatgaagtcttcaaaactctagcagaaagtgat
gaggggaagttacatgtgctaagagttatgtttgaggtttggaggaaccatccacagatg
attgctgtcctcgtggataagatgattcgtacacagattgttgactgtgctgcagtagca
aattggatcttctcctcagaactgtctcgtgactttactagactgtttgtttgggaaatc
ttacactctacaattcgtaagatgaacaaacatgttctcaagatccaaaaagagctagaa
gaagctaaagagaaactggcaaggcaacacaaacggcgaagtgatgatgatgacagaagc
agcgacaggaaagatggggcccttgaggagcagatagaaaggctgcaggagaaagtggag
tctgcgcagagtgagcagaagaatctcttcctcgtcatatttcagcgttttatcatgatc
ttgactgagcacttagtacgatgtgaaaccgatggaaccagtgtattgacgccatggtat
aagaactgtatagaaaggctccagcagatcttcctgcagcatcatcagataatccagcaa
tatatggtgaccctggagaaccttctcttcactgctgaattagaccctcatatcctggct
gtgttccagcagttctgtgctctgcaggcctaa
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