Sciurus carolinensis (gray squirrel): 124964523 Help Entry 124964523         CDS       T08117                                  Name (RefSeq) collagen alpha-1(XV) chain-like   KO K08135   collagen type XV alpha Organism ncar  Sciurus carolinensis (gray squirrel) Pathway ncar04974   Protein digestion and absorption Brite KEGG Orthology (KO) [BR:ncar00001]  09150 Organismal Systems   09154 Digestive system    04974 Protein digestion and absorption     124964523  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00535 Proteoglycans [BR:ncar00535]     124964523 Proteoglycans [BR:ncar00535]  Extracellular matrix (ECM) proteoglycans   Basement membrane proteoglycans    124964523 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Endostatin Collagen Collagen_trimer Laminin_G_3 Laminin_G_2 Motif Other DBs NCBI-GeneID:  124964523 NCBI-ProteinID:  XP_047380893 EnsemblRapid:  ENSSCRG00010014828 LinkDB All DBs Position 14:complement(33075794..33184130) Genome browser AA seq 1388 aa AA seqDB search MAPRWDLLSRAAAPLDQTGRLTVSPSATYCGRNGQCWRVLLLLSISALLSAVTQTQASTE LAPRSHLDLTELIGVPLPSSVSFVTGYGGFPAYSFGPGANVGRPARTLIPPTFFRDFAVS VTVKPSRPSGGVLFAITDAFQKIIYLGLRLSGVEDGRQRVIFYYTEPGSHVSQEAAAFSL PVMTNRWSRFAVIVQGEEVTLLVDCEEHSHVLFRRSSRPLAFEPSAGIFVGNAGATGLER FTGSIQQLTIHSDPRTPEELCEAQESSASGEGSGLQDPDTVAEIVEAITYTQAPPKEAKV DPINVPPTSPTLSEDTELSGEPVPEETSETNSSVIQHSNLEPGSGEILNDTLDGLPPVDG DPIPETGSGSGAFPVTEETGLAATAVGEAQEPVSTPREVEVGSSPTGISTLPVSTQSLGE GVTSGLDNESLATTATGEAEVPVSTAREAEAGSVPTGEPAFSTFTQDSGEDATLGPKDEG HSTTAAAASEVPLGTFEEEEASGAPTEGLATLTPTVAPGQVVTPAPGNEDWATASTEEPL AVTGGEGSSSAPPDGLPLPVPTTTAPEREVTPAERVHVGVEGQARPKGEKVGAEAEGSGL GWGLDVGSGSGDLMGSEELLRGPPGPPGPPGPPGIPGKPGTDVFNGPPGSPGEDGAAGEP GPPGPEGQPGPDGTSGLPGMKGEKGARGPNGSVGEKGDPGSRGLPGPPGKNGQVGTPGVM GPPGPPGPPGPPGPGCTTGLGFEDTEGSGSIQLLSEPRLSRPTASSGPKGEKGDQGPKGE RGMDGASTVGPPGPRGPPGRIEVLSSSLINITHGSMNLSDIPELMGPPGPDGLPGLPGFP GPRGPKGDTGVPGFPGLKGEQGEKGEPGAILTGDIPLERLKGKKGEPGMHGTPGPMGPKG PPGHKGEFGLPGRPGRPGLNGLKGAKGDRGIMMPGPPGLPGPPGPPGPPGAVVNIKGAVF PVPARPHCKTPVGTTHPGDSELITFHGVKGEKGSWGLPGSKGEKGDQGAQGPPGPPVDPT YLRHFLNSLKGENGDRGFKGEKGDSDGNFFVSGPPGLPGYPGLVGQKGETVVGPQGPPGV PGLPGPPGFGRPGAPGPPGPPGPPGPPAILGAAVALPGPPGPPGQPGLPGSRNLVTAFSN MNDMLQKAHLVIEGTFIYLRDSAEFFIRVRDGWKKLQLGELIPIPADSPPPPALSSNPYQ HQPPLNPILSANYENPALHLVALNTPFSGDIRADFQCFQQARAAGLLSTFRAFLSSHLQD LSTIVRKAERYNLPIVNLKGQVLFNNWDSIFSGQGGQFNTHIPIYSFDGRDVMTDPSWPQ KVVWHGSNTHGVRLVDKYCEAWRTSDMTVTGFASPLSTGKILDQQAYSCANRLIVLCIEN SFLTDARK NT seq 4167 nt NT seq  +upstreamnt  +downstreamnt atggcgccaaggtgggaccttctttcccgcgccgcggctcccttggaccagaccggccgc ctcactgtctctccctcggccacttattgcgggagaaacgggcagtgctggcgcgtgctg ttgctgctctccatctccgcgctcctctccgctgtcacccagacacaagcctcgacagag ttggccccccggagccatctggacctcacggagctcattggtgtccccctgccctcatct gtgtcctttgtcacgggctacggtggctttcccgcctacagcttcgggcctggcgccaac gtgggccgcccggccaggaccctcatcccacccaccttcttcagggacttcgcggtcagc gtcacggtgaagcccagcaggcccagcggtggggtgctctttgccattaccgatgccttc cagaagatcatctaccttggcctgcggctctcaggcgtggaggacggccgccagagggtc atcttctactacacggagcccggctcccacgtgtcccaggaagctgctgccttctccctg ccggtgatgaccaacaggtggagccgctttgctgtgatcgtccagggcgaggaagtgacg ctcctggtggactgcgaggagcacagccacgtccttttccggcggtcctcccggcctttg gctttcgagcccagcgcagggatctttgtgggcaacgcaggcgccaccggactggaaaga ttcaccggctccatccagcagctcaccatccactctgaccccaggactccagaggagctg tgcgaagcccaggagtcgtcggcatcgggagagggcagcggacttcaggacccagacaca gtggctgaaatagtggaggccatcacctacacgcaagccccgcctaaagaagcaaaagtg gaccccataaatgtacctccaacttcacccactctttctgaggacacagagctttctggt gaacctgttccagaggagacctcagaaaccaactccagtgtcatccagcacagcaacctg gaaccagggtctggtgagatcctgaatgacaccctggatggacttcctcctgtggatggt gatcccattcctgagactggctcagggagtggggccttccctgtcactgaagaaacgggg ttagcagcaacagcagtgggggaggcccaagagcctgtcagtactcccagagaagtggag gtcggcagttcacccaccggaatatccaccctgcctgtgtccacccagagtctcggggaa ggggtcacttcaggtctggataatgaaagtttagcaacaactgcaacaggggaggctgag gtgcccgtcagcactgctagggaagcagaggctggcagcgtgcccactggggagccggcc ttctccacgttcacccaggactcgggggaagatgccactctgggtccaaaggatgaagga cattcaaccaccgctgcagctgcttcagaagtgccccttggcacttttgaggaggaggaa gccagtggtgcccccacagagggtctggctaccctcacacccactgtggcccctgggcaa gtggtcactcctgcacctggcaatgaagactgggcaacagcctccacagaggagcccctt gccgtgactgggggtgagggatccagcagtgctccccctgatgggctgccgctcccggtc cccacgacgacggctcccgagagagaagtcactccggctgaacgagtgcatgtgggagta gaaggacaggcaaggcccaaaggagaaaaggtgggagcggaggctgagggctccggccta ggctggggcctggatgtcggttctggctccggggacctcatgggcagtgaggagctatta agaggtcctccaggccccccaggccccccaggcccaccggggattccaggaaaaccagga actgatgtatttaatggaccccctggttctcctggagaggatggagctgctggtgaacct gggcccccaggtcctgagggacagcctggacccgatggaacctccggtcttccagggatg aaaggggagaagggtgcaagagggcctaacggctcagttggtgaaaagggtgaccccggc agcagaggtttaccagggccccctgggaaaaatggacaagtgggcacccctggagtcatg ggacctccagggcctcctggccctcctggacccccaggccctggatgtacaacaggactt ggatttgaggatactgaaggctcaggaagtatccagctgttgagtgagccgagactctcc aggccaactgcttcaagtggtcccaaaggggaaaaaggagaccagggacccaagggtgaa agagggatggatggagccagcactgtgggaccccctgggccccgggggccacctgggcgt atcgaggtcctgtcaagttctttgatcaatatcacccatggatccatgaatttatcggac attcctgagctcatggggcctccgggaccggatggtttgcctgggctgcctggatttcca ggccctagaggaccaaaaggtgacactggtgtgcctggatttccgggactaaaaggagag cagggcgagaagggagagcctggtgccatcctgacaggggatattcctctggaaaggctg aagggaaaaaagggtgaacctggaatgcacgggactccaggacccatgggacccaaagga ccaccaggacacaaaggagaatttggcctcccaggacgaccgggtcgcccaggactgaac ggcctcaagggagccaagggagatcgagggatcatgatgccgggcccacctggtctacct ggtcctccaggaccccctggaccccctggagctgtggtgaacatcaaaggggccgtcttc ccggtacctgcccgaccacactgcaaaacaccggttggtaccactcatcctggggattca gagctcatcaccttccatggtgttaaaggagagaaaggatcctggggtcttcctggctca aaaggagaaaaaggtgaccaaggagcccaaggaccaccaggtcctccagttgatccaact tacctgagacattttctgaatagcttgaagggggagaatggagacaggggattcaaagga gaaaaaggagactccgatggcaacttttttgtgtctgggcctccaggactgccaggatac ccaggcctggttggacagaaaggggagactgtcgttggaccccagggacccccaggagtt cctggactgcctgggccccctggctttggaagacctggtgctcctgggccaccaggaccc ccggggcccccaggacctccggcgatcctgggcgcagccgtggctcttccgggtccaccc ggccctccaggacagccagggcttccaggatccagaaacttggtcactgcgttcagcaat atgaacgacatgctacagaaagcacatttggtcatagaagggacgttcatctatctgagg gacagcgctgagtttttcattcgcgttcgagatggctggaaaaaattacagctgggagaa ctgatccccattcctgccgacagccctccacccccagcactttccagcaacccatatcag caccagcctccactgaaccctattttaagtgccaattatgagaatcctgctctacatttg gttgctctgaacacaccattttctggggacattcgggctgattttcagtgcttccagcag gccagagctgcaggactgttgtccaccttccgagcattcttatcttcccacttgcaagat ctctccacaattgtaaggaaagcagagagatacaaccttccaatagtgaacctcaagggc caagtactttttaataattgggactcgatattttctggccaaggaggtcagttcaataca catattccaatatactcctttgatggtcgggatgtgatgacagatccgtcttggccccag aaggtcgtttggcatggctccaacacccatggcgtccgtcttgtggataaatactgtgaa gcatggcgaacttcagacatgacagtcacaggattcgcctccccactgagcactgggaag attctggaccagcaagcatatagctgtgctaataggctcatcgttttgtgtatcgaaaac agtttcttgacagacgctaggaagtag

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