Sciurus carolinensis (gray squirrel): 124964717
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Entry
124964717 CDS
T08117
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124964717
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncar03041
]
124964717
Spliceosome [BR:
ncar03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
124964717
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
PRP4
Beta-prop_EML
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_Vps41
WD_LRWD1
Beta-prop_IFT140_1st
WD40_like
Ge1_WD40
Beta-prop_WDR35_TULP_N
Beta-prop_WDR19_1st
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
124964717
NCBI-ProteinID:
XP_047381307
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Position
14:complement(20664062..20679923)
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AA seq
521 aa
AA seq
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MASSRASSTAPKTKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIE
AGNINITSGEVFEIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITL
FGEGPAERRERLRNILSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWI
ANYSLPRAMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSP
DSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTISLDQKDVNLASCAA
DGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQ
EGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYH
IATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPG
WSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctcacgagcctcctccacggcacccaaaactaaagcacctgatgacttagta
gctcctgttgtgaagaaaccacacatctattatggaagtttggaagagaaggagagagag
cgtctggccaaaggagagtctggcattttgggaaaagaaggattgaaagcaggaattgaa
gcaggaaatattaatataacctctggagaagtatttgaaattgaagagcacatcagtgaa
cggcaggcagaagtattggctgagtttgaaagaaggaagagagcccggcaaatcaatgtt
tccacagatgactcagaggtcaaggcttgccttagagccttgggggaacctatcacactt
tttggagagggccctgctgaaagaagagaaaggttaagaaatatcctctcagtggttggt
actgatgccttaaaaaagacaaaaaaagatgatgagaaatctaagaagtccaaagaagag
tatcagcaaacctggtaccatgaagggccaaacagcctgaaggtggctaggctgtggatt
gctaattattcactgcccagggcaatgaaacgcttggaagaggcccgtctccataaagag
atacctgagacaactaggacctcccagatgcaagagctgcacaaatccctccggtctctg
aataacttctgcagtcagattggggacgatcggcctatctcctactgtcactttagtccc
gattccaaaatgctggccacagcttgttggagtgggctttgcaagctctggtctgttccc
gattgcaacctccttcacacacttcgaggccataacacaaatgtaggagcaattgtattc
catcccaaatctactatctcattggaccaaaaagatgtcaatctggcttcttgtgctgct
gatggttctgtgaagctttggagtcttgacagtgatgaaccagtggctgatattgaaggc
catacagtgcgtgtggcccgggtgatgtggcatccatcaggacgtttcctgggcactacc
tgttatgaccgttcatggcgcttatgggatttggaagctcaagaagagatcctgcatcag
gaaggccacagcatgggtgtgtatgacattgccttccatcaagatggctctttggctggc
actgggggactggatgcatttggtcgtgtttgggacctgcgtacaggacgttgtatcatg
ttcctagaaggccatctcaaggaaatctatggaataaatttctcccccaatggctaccac
attgcaactggcagtggtgacaacacttgcaaagtgtgggaccttcgacagcggcgttgt
gtctataccatccctgcccatcagaatttagtgactggggtcaagtttgaacctatccat
gggaatttcttgctcactggcgcctatgacaacacagccaagatctggacccacccaggc
tggtccccactgaagactctggctggccatgaaggcaaagtgatgggcctagacatttct
tctgatggacagctcatagccacctgctcatatgacaggaccttcaagctctggatggct
gaatag
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