Sciurus carolinensis (gray squirrel): 124964729
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Entry
124964729 CDS
T08117
Name
(RefSeq) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04137
Mitophagy - animal
ncar04141
Protein processing in endoplasmic reticulum
ncar05014
Amyotrophic lateral sclerosis
ncar05022
Pathways of neurodegeneration - multiple diseases
ncar05134
Legionellosis
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
124964729
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
124964729
09160 Human Diseases
09171 Infectious disease: bacterial
05134 Legionellosis
124964729
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
124964729
05022 Pathways of neurodegeneration - multiple diseases
124964729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124964729
03009 Ribosome biogenesis [BR:
ncar03009
]
124964729
04131 Membrane trafficking [BR:
ncar04131
]
124964729
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ncar04147
]
124964729
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
124964729
Ribosome biogenesis [BR:
ncar03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
124964729
Membrane trafficking [BR:
ncar04131
]
SNARE
SNARE associated proteins
Others
124964729
Autophagy
Aggrephagy
Other aggrephagy associated proteins
124964729
Exosome [BR:
ncar04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
124964729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
AAA_22
TIP49
AAA_14
NPHP3_N
RNA_helicase
Vps4_C
AAA_28
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
ATPase_2
IstB_IS21
AAA_18
AAA_7
ATPase
DUF815
ABC_tran
AAA_24
NB-ARC
TsaE
ResIII
NACHT
Sigma54_activat
Viral_helicase1
SLFN-g3_helicase
KAP_NTPase
DUF3944
Zot
Motif
Other DBs
NCBI-GeneID:
124964729
NCBI-ProteinID:
XP_047381337
LinkDB
All DBs
Position
14:37588845..37605097
Genome browser
AA seq
806 aa
AA seq
DB search
MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK
GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV
INQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN
LRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAM
EVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGNQGG
AGPSQGSGGGTGGSVYTEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcctctggagccgattcaaagggtgatgacttatcaacagccattctcaaacagaag
aaccgtcccaatcggttaattgttgatgaagccatcaatgaggacaacagtgtggtctcc
ttgtctcagcccaagatggatgaactgcagttgttccgaggtgacacagtgttgctgaaa
ggaaagaagaggcgggaagctgtgtgcattgtgctttctgatgacacatgttctgatgag
aagattcgaatgaatagagttgttcggaataaccttcgtgtacgcctaggggatgtcatc
agcatccagccatgccctgatgtgaagtacggcaaacgtatccatgtgctacccatcgat
gacacggtggaaggcatcactggcaatctctttgaggtataccttaagccgtacttcctg
gaagcttatcgacccatccggaaaggagacattttccttgtccgcggtgggatgcgtgct
gtggagttcaaagtagtggagacagatcccagcccttattgcattgttgctccagacaca
gtgatccactgtgaaggagagcctatcaaacgagaggatgaggaagagtccttgaatgaa
gtaggctatgatgacattggtggctgcaggaagcagctagctcagataaaggagatggtg
gagcttcccctgagacatcctgcactctttaaggcaattggtgtgaagcctcctcgggga
atcctcctctatggacctcctgggactgggaagaccctcattgcccgagccgtggcaaat
gagactggagcctttttcttcttgatcaatggtcctgagatcatgagcaagttggctggt
gagtctgagagcaaccttcgtaaagcctttgaggaggctgaaaagaatgctcccgctatc
atctttattgatgagctggatgccattgctcccaaaagagagaaaactcatggggaggtg
gagcggcgtattgtatcacagttgttgacccttatggatggcctaaagcagagagcacat
gtaatagttatggcagcaacaaacagacccaacagcattgacccagccctacggcgattt
ggtcgctttgacagggaggtagatattggaatccctgatgctacaggacgcttggaaatt
cttcagatccataccaagaacatgaagctggcagatgatgtggacctggaacaggtagcc
aatgagactcatggacatgtgggtgctgacttagcagccctgtgttcagaggctgccctg
caggccatccgcaagaagatggatcttattgacctagaggatgagaccattgatgctgag
gtcatgaactcccttgctgtgactatggatgacttccggtgggccttgagtcagagcaac
ccatcagctctgcgggaaactgttgtagaagtgccacaagtaacctgggaagacattggg
ggcctggaggatgtcaaacgtgaacttcaggagctagtccagtatcctgtagaacaccca
gacaaatttctcaagtttggtatgacaccctccaagggagttctattctatggacctcca
ggctgtgggaaaaccttgctggctaaagccattgctaatgaatgccaggccaacttcatc
tccatcaagggtcccgagctgctcactatgtggtttggagaatctgaggccaatgtcagg
gaaatctttgacaaggcacgccaagctgccccctgtgtgcttttctttgatgagctggat
tcaattgccaaagctcgtggtggtaacattggagatggtggtggggctgctgaccgagta
atcaaccagatcctgacagaaatggatggcatgtctacaaaaaagaatgttttcatcatt
ggcgctaccaaccggcctgacattattgatcctgccatcctaagacctggccgccttgat
cagcttatttacatcccactacctgatgagaagtcccgtgttgccatcctcaaggccaat
ctgcgcaagtccccagttgccaaggatgtggatttggagttcctggcaaagatgactaat
ggcttctctggagctgacctgacagagatttgccaacgtgcttgtaagctggccattcgt
gaatccatcgagagtgagattaggcgagagcgggagaggcagacaaacccatctgccatg
gaagtagaagaagatgatccagtgccagagatccgcagagatcactttgaggaagccatg
cgctttgcccgccgttctgtcagtgacaatgacattcggaagtatgaaatgtttgctcag
acccttcagcagagtcgaggttttggcagtttcagattcccttcagggaaccagggtgga
gctggccctagtcagggcagtggaggtggcacaggtggcagtgtgtacacggaagataat
gatgatgacctgtacggctaa
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