KEGG   Sciurus carolinensis (gray squirrel): 124964887
Entry
124964887         CDS       T08117                                 
Name
(RefSeq) LOW QUALITY PROTEIN: negative elongation factor B-like
  KO
K15180  negative elongation factor B
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    124964887
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ncar03021]
    124964887
Transcription machinery [BR:ncar03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    NELF complex
     124964887
SSDB
Motif
Pfam: COBRA1 BatA
Other DBs
NCBI-GeneID: 124964887
NCBI-ProteinID: XP_047381568
LinkDB
Position
14:complement(620822..632047)
AA seq 580 aa
MFAGLQDLGVANGEDLKETLTNCTEPLKAIEQFQTENGVLLPSLQSALPFLDLHGTPRLE
FHQSVFDELRDKLLERVSAIASEGKAEERYKKLEDLLEKSFSLVKMPSLQPVVMCVMKHL
PKVPEKKLKLVMADKELYRACAVEVKRQIWQDNQALFGDEVSPLLKQYILEKESALFSTE
LSVLHNFFSPSPRTRRQGEVVQKLTQMVGKNVKLYDMVLQFLRTLFLRTRNVHYCTLRAE
LLMSLHDLDVGDICTVDPCHKFTWCLDACIRERFVDSKRARELQGFLDGVKKGQEQVLGD
LSMILCDPFAINTLSLSTIRHLQELVSQETLPRDSPDLLLLLRLLALGQGAWDLIDSQVF
KEPKMEAELVTRFLPMLMSLVVDDHTFNVDQKLPAEEKAPVSYPSTLPESFTKFLQEQRM
ACEVGLYYVLHITKQRNKNALLRLLPGLVETFGDLAFSDIFLHLLTGSLALLADEFALED
FCSSLFDGFFLTASPRKENVHRHVLRLLLHLHPRVAPSKLEXLQKALEPTGQSGEAVKEL
YSQLGEKLEQLDHRKPSPAQAAEPPALELPLPSVPAPAGL
NT seq 1743 nt   +upstreamnt  +downstreamnt
atgttcgcggggctgcaggacctgggcgtggccaacggcgaggacctgaaggagaccctg
accaactgcaccgagccgctcaaggccatcgagcagttccagaccgagaatggcgtgctg
ctgccctccctgcagtcggccctgcccttcttggacctgcacgggacgccgcggctggag
ttccaccagtcggtgtttgacgagctacgggataagctgctggagcgagtgtcagccatc
gcttcggaggggaaggccgaggaaagatacaagaagctggaagatcttctggagaagagc
ttttctctggttaagatgccatccctgcagccagtggtgatgtgtgtcatgaaacacctg
cccaaggttcctgaaaagaagctgaagctggtgatggccgacaaggagctgtaccgagcc
tgtgcggtggaggtgaagcggcagatctggcaggacaaccaggcgctcttcggggatgaa
gtctccccactgctgaaacagtacatcctggagaaggagagtgcactcttcagcacagag
ctgtctgtcctgcacaacttcttcagtccttcccccaggaccagacgccagggcgaggtg
gtgcagaagctgacacagatggtcgggaagaacgtgaagctgtacgacatggtgctgcag
ttcctgcgcacactcttcctgcggaccaggaatgtgcactactgcacgctgcgggctgag
ctgctcatgtccctgcacgacctggacgttggtgacatctgcactgtggacccctgccac
aagttcacttggtgcctggatgcctgtatccgagagcggttcgtggacagcaagagagcc
cgggagctacagggatttcttgatggagtgaagaagggacaggagcaagtcctgggggac
ctgtccatgatcctctgcgacccctttgccatcaacacgctgtctctcagcaccatccgg
cacctgcaggagctcgtcagccaggagaccttgcccagggacagccctgacctcctgctg
ttgcttaggctgctggccctgggccagggtgcctgggacctgattgacagccaggtcttc
aaggagcccaagatggaggcggagctggtcacaaggttcctgcccatgctcatgtccctc
gtggtggacgaccacactttcaatgtggaccagaagcttccagctgaggagaaagccccg
gtgtcctaccccagtacacttcccgagagcttcaccaagttcctgcaggagcagcgcatg
gcctgcgaggtggggctgtactacgtcctgcacatcaccaagcagcggaacaagaatgcg
ctcctgcgcctgctgccggggctcgtggaaacgttcggcgacctggccttcagcgatatc
ttcctccacctgcttacggggagcctggcgctgctggccgatgagtttgccctggaggat
ttctgcagcagcctctttgatggcttcttcctcacagcctcacccaggaaggagaatgtg
catcgccatgtgctgcggctgctcctccacctgcaccctagagtggctccatccaagctg
gagngcttgcagaaggccctggagcccacaggccagagtggcgaggctgtgaaggagctc
tactcccagctgggtgagaagctggagcagctggaccatcgaaaacccagcccagcccag
gctgcagagcctccagcgctggagctgcctctccctagcgtgcccgctccagctggtctc
tga

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