KEGG   Sciurus carolinensis (gray squirrel): 124964982
Entry
124964982         CDS       T08117                                 
Name
(RefSeq) pre-mRNA-splicing factor SPF27 isoform X1
  KO
K12861  pre-mRNA-splicing factor SPF27
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    124964982
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ncar03041]
    124964982
   03400 DNA repair and recombination proteins [BR:ncar03400]
    124964982
Spliceosome [BR:ncar03041]
 Complex B
  Other components
   Prp19 complex
    124964982
 Complex C
   Prp19-CDC5 complex
    124964982
DNA repair and recombination proteins [BR:ncar03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    124964982
SSDB
Motif
Pfam: BCAS2 THOC7 HAUS2 INO80F Tup_N TPR_MLP1_2 Relaxase_C DUF3450 PRKG1_interact
Other DBs
NCBI-GeneID: 124964982
NCBI-ProteinID: XP_047381741
LinkDB
Position
1:107082766..107102049
AA seq 225 aa
MAGTGLVAGEVVVDALPYFDQGYEAPGVREAAAALVEEETRRYRPTKNYLSYLTAPDYSA
FETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVR
IENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLRE
MESNWVSLVSKNYEIERTIVQLENEIFQIKQQNGEANKENIRQDF
NT seq 678 nt   +upstreamnt  +downstreamnt
atggcgggcacggggttggtggctggcgaggttgtggtggatgcgcttccgtattttgat
caaggttatgaagcccctggcgtgcgagaagcggcggcagcgttggtggaggaggaaact
cgcagataccgacctaccaagaattacctgagctatctgacagccccggattattctgca
tttgaaactgacataatgagaaatgaatttgaaagactggctgctcgtcaaccaattgaa
ttgctcagtatgaaacgatatgaacttccagccccttcctcgggtcaaaaaaatgacatt
actgcatggcaagaatgtgtaaacaattctatggcccagttagaacatcaggcagttcga
attgagaatctggaactaatgtcccagcatggatgtaatgcctggaaagtatataatgaa
aatctagttcatatgattgaacatgcgcagaaagagcttcagaagttaaggaaacatatt
caggatttaaactggcagcgaaagaacatgcaactcacagctggatctaaattaagagaa
atggagtcaaattgggtgtccctggtcagtaagaattatgagattgaacggactattgtg
caactagaaaatgaaatctttcaaattaagcagcaaaatggagaggcaaacaaagaaaac
atccggcaagatttctga

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