Sciurus carolinensis (gray squirrel): 124965018
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Entry
124965018 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13A-like
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncar04131
]
124965018
Membrane trafficking [BR:
ncar04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
124965018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
124965018
NCBI-ProteinID:
XP_047381797
LinkDB
All DBs
Position
14:77847772..78116287
Genome browser
AA seq
3169 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDTSQLSLGIWKGDVALKNLEVKENALSQLDVPFKVKVG
HIGNLKLSIPWKNLYTQPFEAVLEDIYLLIVPSSRIKYDPLKEEKQLLEAKQQELKRIEE
TKQKVVDQEKQQAEKQDTFAEKLVTQIIKNLQVKISNIHVRYEDDITNREKPLSFGISLQ
NLSMQTTDQYWVPCLHDETEKLVRKLIRLDNLFAYWNVQSQMFYLNDYDESLDDLKNGIV
NENIIPQGYDFVFRPISAKGKLQMNRRSDFDFSDPKINLEVELHNIAIEFNKPQYFSVME
LLESVEMMTQNLPYRKFKPDVPLHYHAKEWWAYAIHGVLEVNVCPSLRMWSWKNIREHRK
KLKQYKELYKKKLINKKLPGEILMSLQELEKALDVFNITIARQQAEVEVKKAGYKIYRQG
MKDPEDKKGWFNWLWTWSESHTKQQPDVKPGILEEMLTPEEKVLLYEAIGYSETAVDPTL
PKTFEAMKFFVHLKSMSIVLRENNQKPELIDIVVEEFSTLIVQRPGAQAIKFETKIDSFH
ITGLPDNSKKPRLLSSLDGTSLFQIIFEINPLDETVSQRCIIEAEPLEMIYDARTVNSIM
EFFRPPKEVHLAQLTSATLTKLEEFRDKTATGLLYIIETQKVLDLRINLKASYIIVPQDG
IFTPTSNLLLLDLGHLKVASKIRSELPDVKHGGANLEEIMQRAYDSFDIHLTSIQLLYSR
VGDNWKEARKLNVSTQHILVPMHFNVELSKAMVFMDLRMPKFKIFGELPLVSLRISDKKL
QGIMELVESIPKPVLITDVSAPVKSIQIQASTGSGPTHISQKIIPILELPYITEDDSEEE
FFDAPCSPLGEFPQVPTRIKNIQHKKLQKQDCSVNLSEFKMRFEVAEVLIQFYHLVGDCE
LPVVEIDVLGLGTEVELRTFDLKASAFLKEFCLKCPEYVDENKKPVYLVTTLDNTMEDLL
TLEYVKAEKNVPDLKSTYNNVLQLLKVEFSSLDIHLHTEALLNTMNYLNNILPQSVEKRT
SVSVGETEDKGDVIKKLALKLSMNEDIITLQILAELSCLRIFIQDQKHNISEIKIEGLDS
EMIMRTSVVEINAKLRNIIVLDSDIMAVYKKAVYITGKEVFSFKLVFYMDVTAGSADTDM
NVVDVQVNXTVGCIEVVFVTKFLYSIMAFIDNFQAAKQALAEATVQAAGMAATGVKELAQ
RSSRMALDIHIKAPVVVIPQSPVSENVFVADFGLITMKNKFILISESQSYPPPVIDLITI
KLSEMRLYRSQYINGAYQEVLDLLLPLNLEVVVERNMSWSWYQEIPCFNVNAQLKPMEFI
LSQEDLTTTFKTLYGNIWYQGFQASSAEVKDHSSNAGGVIXASPHSGGATVVTAAVVEVH
SHASQVKTTLNMTFKTDYLTMILYSPGPEQAFTDVRDPSLKLAEFKLENIISTLKICTDE
STFSSFSLRNCILDDKRPHIKKATPRMIGLTVGFDKKDMMDVKYRKIRDAAVTDAVFQEM
YICASVEFLLTVANVFLEAYTAGSVIETNVQTWTSKEAPVLEPEKWEINILIKNPEIVFV
ADMTRNDAPALVITTQCEICCKGDLKNTTMTAAIKDLQIRACPFLPVKRKGRITTVLQPC
DLFYQSTQTGTDPQVIDISVKSLTLKVSPVIINTMITITSALYTTKETSPKEMASSSAHL
WEKKDTKNLKMWFLEGSNETEKITPSVELVPKGEMMKLNIDSIFLVLEAGVGHRTVPMLL
AKSSFSGECKNWSSLINLHCQLELEVHYYNEMFGVWEPLLEPLEIDQTEDFRPWNLGIKM
KKKAKKAIVESDTEEENYKVPEYKTVISFYSKDQLNITLSKCGLVMLSNLVKAFTEAATG
SSAAFIRDLAPFMILNCLGLTISVSPSDSFNVLNVPMAKSYILKNMESLSMDYVRSKDND
HFNAMTSLSSKLFFILLTPVNHSTADKIPXTKXDERLYTVRHRESGVERSIVCQIDAVEG
SKKVTIRSPVQIRNHFSIPISVYEGSTLLGIASPENEFNIPLASYRSFLFLKPEDEDYQR
CEGIDFEEIIKNDGALLKKKCRSINPSKKSFIINIVPEKDSLASLSVYSEDGWDLPYIMH
LWPPILLRNLLPYKIAYYIEGIENTVFTLNEGHSAQVYTVQVDKAKLHLKLLDYLNHDWK
SEFYIKSNQQDISFISFACVTDMEKTELDIAIHMTYNTGQTIVAFHSPYWMVNKTSRMLQ
YKADGIHRKHPPNYKKPVLFSFQPNHFFNTNKVQLMVTDSGLSDQFSIDTVGSHGAVKCK
GPKMEYQVGVTINLSSFNITRIVTFTPFYMIKNKSKYHISVAEEGSDKWLSLQLEQCIPF
WPEDVSSKLLIQVEKSEGPPKRIYFNKQENCILLRLNNELGGIIAEVNLAEHSTVITFSD
YHDGAATFLLINHTKNDLIQYKQSSLSEIEDSLPPGKAVFYTWADPVGSRKLKWSCGKSH
GEVTQKDDMMTPINLGKKTIYLVSFFEGLQRIILFTEDPRVFKVTYESEKAELAEQEIVL
ALQDVGISLVNNYTKEEVAYIGITSSDVVWETKPKKKARWKTMSVKHTEKLEKEFKEYTE
SSPLEDKVIELDTSIPVCFTPSGNNMKILQPHVQAIRRNYLPALKVEYSTSAHQSSFRIQ
IYRIQIQNQIHGAIFPFVFYPIKPPKSVTMDSAPKPFTDVSIVMRSAGHSQISRIKYFKV
LIQEMDLRLDLGFVYALADLMTEVEGTEITELELFHKDKDAFEEEYETVSLVDQSQVSLY
EYFHISPIKLHLSVSLSSGRDEPKDDSEHHGGLIPVHSLNLLLKSIGATLTDVQDVVFKL
AFFELNYQFHTTSELQSEVIRHYSKQAIKQMYVLILGLDVLGNPFGLIREFSEGVEAFFY
EPYQGAIQGPEEFVEGMALGLRALVGGAVGGLAGAASKITSAMAKGVAAMTMDEDYQQKR
REAMNKQPAGLREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGA
VARPTGGIIDMASSTFQGIKRATESYEVESLRPPRFFNEDGVIRPYRLRDGTGNQMLQVM
ENGRFAKYKYFTHVMINKTDMFMITRSGVLFVTKGAFGQLTCEWQYSFDEFTKEPFIIHG
RRLRIEAKERVKSVFHAKEFGKIINFKTPEDARWILTKLEEAREPSPSL
NT seq
9510 nt
NT seq
+upstream
nt +downstream
nt
atggtattcgagtcggtggttgtggacgtgttgaaccggttcttgggggactatgtggtg
aacctggacacgtcccagctctctttgggcatctggaaaggagatgtggccctcaagaac
ctggaagttaaagaaaatgccctgagtcaactggatgtgccctttaaagttaaagttggt
catataggtaatcttaaactttcaattccatggaaaaacctttatactcaaccatttgaa
gctgtattagaagatatttatttacttatagtgccttcttccagaataaaatatgatcct
ttaaaagaagaaaaacaactcctagaagcaaagcaacaggaattaaaaagaattgaagaa
acaaagcaaaaagtagttgatcaagaaaaacaacaagcagagaaacaggacacttttgca
gaaaaattagttactcagatcataaaaaatcttcaagtgaaaatttccaacatccatgtt
cgttatgaagatgatatcacaaatcgagagaaaccgctgtcatttggtatttctttacaa
aatctcagtatgcagaccactgatcaatactgggttccatgtttacatgatgaaactgag
aaactagtccgtaagttaattcgattggacaaccttttcgcctattggaatgtgcagtct
cagatgttttatcttaatgattatgatgaatcattggacgacttgaagaatggtattgtc
aatgaaaatattattccacaaggttatgactttgtatttcgccccatatctgctaaaggc
aaacttcaaatgaatcgccgatcagattttgacttttctgaccccaaaataaacctggaa
gttgagttacataatatagcaattgaatttaataaaccacagtattttagtgttatggag
cttcttgaatcagttgaaatgatgacacaaaacctgccatacaggaaattcaaacctgat
gttcctcttcactaccatgccaaggaatggtgggcttacgctatacatggtgttcttgaa
gttaatgtttgccctagcttacggatgtggtcatggaagaatattcgtgaacacagaaaa
aaactgaagcagtataaagaactatacaaaaaaaagttaataaataagaaactacctggt
gaaattctcatgtctttacaggaactggaaaaagccttggatgtctttaatataactata
gctagacaacaggcagaagttgaggtaaagaaagctggatacaagatttatagacaagga
atgaaagatccagaggataaaaaaggatggtttaactggctgtggacttggtcagaatca
catactaaacaacaaccagatgttaaacctggaattcttgaagaaatgttgacacctgaa
gaaaaagttttactctatgaagcaattggctatagtgaaacagcagttgatccaaccttg
cccaaaacatttgaagccatgaagttttttgttcacttgaaaagtatgtctattgttcta
agagaaaataaccaaaaacctgagctgatagacattgtagtagaagaatttagcacttta
attgtgcaaagaccaggagcacaagcaataaaatttgaaaccaaaatagattcatttcat
attactggcttaccagataattcaaaaaaaccccgcctcctgtcttcattagatggtaca
tcactcttccagattatatttgagataaatccattagatgaaaccgtttctcagaggtgt
atcatagaagctgaacctttagaaatgatatatgatgcaaggacagtgaatagtataatg
gaattcttcagacctccaaaagaggtacatctagcacaactcacttcagcaactttaaca
aaacttgaagaatttcgtgataagacagcaacaggtcttctgtatattattgaaacacag
aaagtacttgatctcagaattaatttgaaggcttcatacattattgtcccacaagatgga
atttttacccctacatccaatcttcttcttttggatcttggtcatctaaaggtggcaagt
aaaattcgttcggaattaccagatgtgaaacatggtggtgccaaccttgaagaaattatg
caaagagcttatgattcctttgatattcaccttacaagcatacagctgctttatagtaga
gtgggtgataattggaaagaagcacgaaaactcaatgtatctacacagcatattttagtg
cccatgcacttcaatgtggaactctctaaggctatggttttcatggatttaaggatgccc
aaattcaagatttttggagagttacctcttgtttctttacgaatctctgataaaaagctg
caagggattatggaattggttgaaagcattccaaaacctgtacttataactgatgtatct
gcccctgtgaaatcaattcagattcaagcatctactggatctggaccaacacatatttca
cagaaaataattcctatcttggaacttccatatattactgaggatgactcagaggaagaa
ttttttgatgcaccatgtagtcccttgggagagtttcctcaagttccaactagaattaaa
aatattcaacacaaaaagttacaaaagcaagattgttcagtaaatttgtctgagtttaaa
atgcgatttgaagtagcagaggttttgattcaattttatcaccttgtgggagattgtgaa
ctacctgtggtagaaattgatgttttaggattaggcacagaagttgaacttagaacattt
gatttgaaagcaagtgcctttttgaaagagttctgcttaaaatgcccagaatatgtagat
gaaaacaagaaaccagtttatttggtcacaacattggataacacaatggaagatctgtta
acgttggaatatgtgaaggctgaaaaaaatgtacctgatttgaaaagtacctataacaat
gttttacaactgcttaaggttgaattttcatctttggatattcatttacatactgaagca
cttctaaatacaatgaattatctcaataacattcttccacaatcagtggaaaaacgaacc
tcagtgtctgttggagagactgaagacaaaggagatgtcattaaaaaattagctttaaaa
ctatccatgaatgaagatattataaccttgcagattttagcagaattatcatgtttacgg
atttttattcaagatcagaaacataacatttctgaaattaagattgaaggacttgattct
gaaatgattatgaggacttcagttgttgaaataaatgcaaagctaaggaatataattgtt
ttggattctgatataatggctgtatacaaaaaggctgtgtatatcactggaaaagaagtt
ttcagcttcaaactggttttttacatggatgtaactgctggttctgcagacacagatatg
aatgtggttgatgttcaggttaatntaactgttggttgcattgaagtcgtttttgtcaca
aaatttctgtattctataatggcttttatagataattttcaagcagctaaacaagccttg
gctgaagcaactgttcaggcagcaggaatggctgctactggtgtaaaagaactggcccaa
aggagttctagaatggcactggatattcacatcaaagccccagttgtggtcatcccacag
tctccagtttctgaaaatgttttcgttgctgattttggactaattacaatgaaaaataaa
ttcattctaatatcagagagccagagctatcccccacctgttattgacttgataacaata
aagctgagtgaaatgagactatataggtctcaatatattaatggtgcataccaggaagta
ctggacctattactgccattaaatcttgaagtggttgttgagcgaaatatgtcgtggagt
tggtaccaggaaattccctgttttaatgtaaatgctcagctaaaacctatggagttcatt
cttagtcaagaagatttaacaactacttttaaaactttgtatggcaacatatggtatcag
ggttttcaggcctcatctgctgaagttaaagaccactctagcaatgctggtggagtaatt
natgcttcaccccattcaggaggagcaactgtggtaacagctgctgttgtagaagtacat
tcacatgcttctcaagttaagacaacactaaatatgactttcaaaactgattatctcacc
atgatattgtatagcccaggtcctgaacaggcttttacagatgttcgtgatccttctctg
aaacttgctgaatttaagttggaaaatattataagtactttaaaaatatgtacagatgag
tcaacattttcttctttctcattaagaaactgtattttagatgataaaaggcctcacatc
aagaaagcaactccgagaatgataggactgactgttgggtttgacaaaaaggacatgatg
gatgttaagtataggaaaatcagagatgctgctgtgactgatgcagtttttcaagaaatg
tatatttgtgcaagcgtggaattcctactgacagttgcaaatgtctttttggaggcctac
acagcaggcagtgttatagaaaccaatgttcaaacatggacttctaaggaagcacctgta
ctagaaccagagaaatgggaaattaatattcttattaaaaaccctgaaattgtgtttgtg
gctgacatgacaagaaatgatgctcctgccttggtcattacaacacaatgtgaaatttgc
tgtaaaggtgaccttaaaaatactacaatgactgctgctattaaagatcttcaaatcaga
gcatgcccatttctcccagtcaagagaaaaggcagaattactactgttttgcagccctgt
gacttgttttatcagtctactcagacaggtacagatccacaagtgattgatatatcagta
aaatcccttacactaaaggtttcaccagttatcataaataccatgattactataacttca
gcactttatacaactaaagaaacctctccaaaagaaatggcttcttcttcagcacattta
tgggaaaagaaggatacaaagaatttaaaaatgtggtttcttgaaggatcaaatgaaact
gaaaaaataactccctcagttgaattggtacccaaaggagagatgatgaaattgaacatt
gattctatttttctggttcttgaggctggagttggtcatagaacagtgcctatgctttta
gcaaagtcttctttttcaggggaatgcaaaaactggagtagccttataaatctccactgt
cagcttgagctagaagttcattattataatgaaatgtttggcgtatgggagcctttgctt
gaaccattagaaattgatcagaccgaagacttcagaccgtggaatcttggaatcaagatg
aaaaagaaagcaaaaaaagctattgttgagtcagatactgaggaagaaaactacaaagta
ccagaatataaaactgtcatcagtttctattcaaaagatcagttaaacattacattatcc
aaatgtggccttgtaatgttaagtaatttagttaaggcatttacagaagctgctactgga
tcttcagctgccttcataagggatctagcaccatttatgattttaaattgtcttggactt
actatctctgtttcaccgagtgattcttttaatgtactcaatgttcctatggcaaaatca
tacatattgaaaaatatggagagtttaagtatggattatgtacgaagtaaggacaatgac
cattttaatgcaatgaccagcctaagcagcaaactcttcttcattcttcttacccctgtt
aaccactcaactgctgataagattcctntaacaaagtaggacgaacgtctgtacactgta
agacacagagaatctggagttgaaagatctattgtttgtcaaattgatgcagtagaagga
agtaagaaggtaacaattcgctccccagtgcagattagaaatcatttttcaattccaatc
tctgtttatgaaggaagtactttgttgggaattgcttcacctgaaaatgaattcaacata
ccattagcatcttaccggtcatttctttttctgaagccagaagatgaggactatcaaagg
tgtgaaggaattgactttgaagaaattattaaaaatgatggagctcttctaaagaagaaa
tgtagatctataaacccttctaagaaatcatttattattaatattgtcccagaaaaagat
agcttggcatctctatcagtgtattctgaagatggttgggacttaccatacataatgcat
ttgtggccacccatactacttcgaaatcttcttccttacaaaattgcttattatatagag
ggaattgaaaatacagtttttactctcaatgaaggacattcagcccaggtttatactgta
caagtggataaagccaagctacatttaaaattgcttgattatctaaatcatgattggaaa
agtgaattttatataaaatctaatcaacaagacattagttttatcagttttgcctgtgtt
acagatatggaaaagactgagttagatattgctatccatatgacttataacactggtcag
acaattgtggcatttcatagtccatactggatggtcaataaaacttctcgaatgttacaa
tacaaagcagatggaattcatcgaaagcatccacctaattacaaaaaaccagttctcttt
tcttttcagccaaatcacttttttaataccaataaggttcagcttatggtaactgatagt
gggttgtcagatcagttttcaattgatactgttggtagtcatggagctgttaaatgcaaa
ggcccgaaaatggaatatcaagtcggtgtcactataaaccttagcagttttaacattacc
agaattgtgacatttactcctttttatatgattaaaaacaagagcaaatatcatatatca
gtggctgaagagggaagtgataaatggctctctcttcagttggagcagtgtatccccttt
tggcctgaagatgtgtccagtaagcttcttattcaagttgaaaagagtgaaggtcctccc
aaaaggatatattttaacaagcaagaaaattgtattttattgcgtctaaataatgagctt
ggaggtatcatagcagaagttaatttggctgagcattcaaccgttattacattttcagat
tatcatgatggggcagctacgttcctgttaataaatcacaccaagaatgaccttattcag
tacaaacaaagttctcttagtgaaattgaagattcccttcctcctggaaaagcagtgttt
tatacctgggctgatccagtgggctctagaaaactgaagtggagttgtgggaaaagccat
ggggaagttacacaaaaggatgatatgatgacacctataaatttgggaaaaaagacaatt
tatttagtttcattctttgaaggcttacagcgcattattttattcactgaagatccaagg
gtgtttaaagtaacatatgaaagtgagaaagcagagttagcagagcaagaaattgtgttg
gcattacaagatgttggaatttcacttgtcaacaattacacaaaggaagaagtagcctat
ataggcattacaagttctgatgtggtttgggaaacaaagcccaagaagaaggcaaggtgg
aagacaatgagtgtaaagcatactgaaaagttggagaaagaatttaaggaatatactgaa
tcttcacctttagaagacaaggttattgagttggacactagtattccggtttgcttcaca
cctagtgggaataacatgaaaattttgcaacctcatgtacaagctatacgaagaaattat
cttccagcattaaaagtggaatatagcacatctgcacatcaatcttcatttagaattcag
atttacagaatacagatccaaaaccagattcatggggctatttttccattcgtgttttat
cctattaagcctccaaagtctgtcacgatggactcagcaccaaagcctttcacagatgtc
agtattgtcatgagatctgcaggacattcccagatatcacgtattaagtatttcaaagtg
ttgattcaagaaatggatctcaggttagatcttggatttgtctatgctctagcagacctc
atgactgaagttgaggggactgaaataacagagcttgaacttttccataaagataaagac
gcttttgaagaagaatatgagacggtttcattagtagatcaatcacaagtcagtctctat
gaatattttcatatatctcctatcaagctgcatttaagtgtttcactgagttcgggtaga
gatgaacctaaagatgattcagagcatcatggaggactgatccccgttcattctttaaat
cttttgctaaagagtattggtgccacccttacagatgtacaagatgtagtttttaagctt
gccttttttgaactcaactatcagttccacacaacatccgaactgcagtctgaagtaata
agacactattcaaaacaggccattaagcagatgtatgtactaattcttggacttgatgtt
ttgggaaatcctttcggcttaattagagaattttcagaaggtgtggaagcctttttttat
gaaccttaccagggggccatccagggtcctgaagaatttgtggaaggaatggcactagga
ctcagagcactagttggtggagctgtgggtggattggctggggctgcctccaaaatcacc
agtgctatggctaaaggagtagcagctatgactatggatgaagactatcagcagaagaga
agagaagctatgaataagcaaccagctgggcttagagaaggcattactcgtggaggaaaa
ggcttagtttctggttttgtaagtggcattacgggaattgttacaaaaccaatcaaagga
gctcaaaaagaaggagcagctggtttctttaaaggtgttgggaaaggtttagttggagca
gtggccagaccaactggaggcatcatagacatggctagcagtacatttcagggaataaaa
agagctacagaatcttatgaagtggagagtctacgacctcctcggttctttaatgaagat
ggagttatcagaccttacaggttgagggatggtactggaaatcaaatgttacaggtcatg
gaaaatggaagatttgcaaaatacaaatattttactcatgtcatgatcaataaaacagat
atgttcatgataactagaagtggtgtattgtttgtaacaaagggagcatttggacaactt
acatgtgagtggcagtatagttttgatgaatttaccaaagagcctttcattattcatggg
agaagactacgcattgaagcgaaggaacgggtgaagtctgtattccatgccaaagagttt
ggaaaaataattaacttcaagaccccagaggatgcaaggtggatcctcacaaagctagaa
gaagcaagagaaccttctccaagcctctga
DBGET
integrated database retrieval system
