Sciurus carolinensis (gray squirrel): 124965192
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Entry
124965192 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 4B-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03022
Basal transcription factors
ncar05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124965192
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
124965192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncar03021
]
124965192
03036 Chromosome and associated proteins [BR:
ncar03036
]
124965192
Transcription machinery [BR:
ncar03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
124965192
Coactivators
SAGA/TFTC/STAGA complex
124965192
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
124965192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
124965192
NCBI-ProteinID:
XP_047381834
LinkDB
All DBs
Position
15:36275856..36422820
Genome browser
AA seq
854 aa
AA seq
DB search
MPAGLSEPAGAAPAVGGASGTVTMAPAGALPVRVESTPVALGAVTKAPVSVCVESTASQP
QRSPVGTLVTKVAPVSTVPKLSGPRLPAPQIVTVKAPSTTTIQLPANLQLPPGTVLIKSN
SGQLMLVSPQQAITRAETTSNIATRPVVPTNAQTVKICTMPNSSSQLIKKVAVAPVKKLA
QIGTTVATTGSNPSSVQSVSVPTNVVTVTPVKPSNTVSSLKPSSLGSSSTPSNESNLKAE
NSAAAQTDLSPTMLENVKKCKNFLAMLIKLACSGSQSPEMGQNVKKLVEQLLDAKIEAEE
FTRKLYVELKSSPQPHLVPFLKKSVTALRQLLPNSQSFIQQCVQQTSGEVVITTCTTTAT
PPVVTTTVSSVQSEKSIIVSGTTAPRTVSVQALNPLAGPGSAKTGVVTLHSVGPASVPGG
TTAGTVLLQTSKPLVTSVPNTVTTVSLQPEKPVVSGAAVTLALPSVTFGETSAAALCLPS
VKPVISSAGTTPDKPVIGTPVQIKLAQPGTLLSQPTGVPQAVKVKQLVVQQPSGGIAKQV
TTISHSSALTIQKSGQKKMPVNTVIPATSILKQITLPGNKIVSLQASTIQKNKIKENGTT
CFRDEDDINDVTSMAGVNLNEENACILATNSELVGTLIQSCKDEPFLFIGALQKRILDIG
KKHDITELNSDAVNLISHATQERLRGLLEKLTTIAQHRMTTSKTSENYILSSDTRSQLKF
LEKLDLLEKQRKDLEEREMLLKAAKSRSNKEDPEQLRLKQKAKELQQLELAQIQHRDANL
TALAAIGPRKKRPLESGSEGLKDSLLASGASSLTATKQLLRPRITRVCLRDLIFCMEQEK
EMKYSRALYLALLK
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atgcccgccggcctcagcgaacccgccggcgccgctcctgctgttgggggcgcctcgggg
accgtgaccatggcccctgctggggctctgcctgtccgtgtggagagcaccccggtggcc
ttgggcgccgtgactaaggctcctgtcagtgtctgcgtggagtccacggcgtcccagccc
cagcggtcccccgtggggaccctggtgaccaaagtggctcctgtcagtactgttcctaaa
ctcagcggccctaggctgcctgctcctcagatcgtcaccgtgaaagcccccagcaccact
acaatccagttgcctgccaatttgcagcttcctccaggaacagttttgatcaaaagtaac
agtggtcagttgatgttggtgtctcctcagcaagccataacaagagccgagaccacaagt
aacatagctacaaggccagtagtaccaacaaatgctcaaacagttaaaatctgtacaatg
ccgaattctagctctcaattaatcaagaaagtggctgtggcacctgttaaaaagttggct
cagataggaactactgtggcaaccactggttcaaacccttcctcagtacaatctgtgtct
gtgccaaccaatgttgtcacagttactcctgtaaagccatcaaatactgtatcttccttg
aagccttcaagtttgggatcatcatctaccccctcaaatgaatctaatctcaaagcagag
aactcagcagctgctcagactgatctttctccgacaatgctagaaaacgtgaagaaatgt
aaaaacttcctggcaatgttaataaaactagcatgcagtggatcacagtctccagaaatg
gggcagaatgtgaagaagctggtggaacaacttttggatgcaaaaattgaagcagaagaa
tttacaaggaaactgtatgttgaactgaagtcttcacctcagcctcatctagttcctttt
cttaagaagagtgttactgccttacgacaacttctgcctaactcccagagcttcattcag
cagtgtgttcagcagacttctggtgaggtggtcattactacctgtaccacaacagcaaca
cctcctgtggtgacaactacagtttcttcagtccagtctgaaaagtccatcattgtttct
ggaacaacagcacctagaactgtgtctgtgcaagctctgaatccacttgctggtccaggg
agtgcaaaaactggagttgtgacactacattctgtgggtccagcttctgtaccaggagga
acaacagctggaactgttttgcttcagacttcaaaaccacttgtgacttcagtaccaaat
acagtaacaacagtctcacttcagcccgagaaaccagttgtctctggagcagcagtaaca
ctggctcttccatcagtaacttttggagaaacttcagctgcagctctttgtcttccatct
gtgaaacctgtcatctcttctgctgggaccacacctgacaaacctgtcattggcactcca
gtccaaatcaaacttgcccaaccaggcacccttctttcccagcctactggtgttccacag
gcagttaaagtcaagcaactagttgtccagcagccctcaggaggcattgcaaaacaagtg
accacaatttcccattcctcagcattgaccattcagaaatctggacagaagaagatgcca
gtgaacactgtaatacctgctacttccattctaaagcaaattactctgcctggaaataaa
attgtgtcacttcaagcatctactattcagaaaaataaaataaaagagaatggaacaaca
tgtttcagagatgaagatgacatcaatgatgtgacttcaatggcaggggtcaacctcaat
gaagaaaatgcctgcatcttagcaacaaactccgaattggttggtacactcattcaatca
tgtaaagatgaaccctttcttttcataggagctctacaaaaaaggattttggacattggt
aaaaagcatgacattacggaacttaactctgatgctgtgaacttgatctcccatgcaaca
caggagagattacgaggccttctagaaaaactgacgacaattgctcagcatcgaatgact
acttccaagacaagtgaaaattatatcctgtctagtgatactcggtcccagctcaaattt
cttgaaaagctggatctattggagaaacagagaaaagatttagaagaaagagaaatgtta
cttaaggcagccaagagtcgttccaataaagaagatccagaacagctgagattaaagcag
aaagccaaagagttacagcaattggaactcgcccagatacagcacagagatgctaatctc
acagctcttgcagctattggaccaaggaagaagagaccactagaatctggaagtgagggc
ttaaaagacagccttcttgcttctggggcatcaagcctgacagctaccaaacagttgctt
cgtccaagaatcacgagagtctgcctcagggacttgatattctgtatggaacaggaaaag
gagatgaagtattctcgagctctgtaccttgcccttctgaagtga
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