KEGG   Sciurus carolinensis (gray squirrel): 124965996
Entry
124965996         CDS       T08117                                 
Name
(RefSeq) LOW QUALITY PROTEIN: high mobility group protein B1-like
  KO
K10802  high mobility group protein B1
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar03410  Base excision repair
ncar04140  Autophagy - animal
ncar04217  Necroptosis
ncar04613  Neutrophil extracellular trap formation
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    124965996
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    124965996
  09143 Cell growth and death
   04217 Necroptosis
    124965996
 09150 Organismal Systems
  09151 Immune system
   04613 Neutrophil extracellular trap formation
    124965996
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ncar03036]
    124965996
   03400 DNA repair and recombination proteins [BR:ncar03400]
    124965996
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ncar04147]
    124965996
Chromosome and associated proteins [BR:ncar03036]
 Eukaryotic type
  Nucleosome assembly factors
   HMG (high mobility group) proteins
    124965996
DNA repair and recombination proteins [BR:ncar03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     124965996
   MMR (mismatch excision repair)
    Other MMR factors
     124965996
Exosome [BR:ncar04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   124965996
SSDB
Motif
Pfam: HMG_box_2 HMG_box HMG_WDHD1
Other DBs
NCBI-GeneID: 124965996
NCBI-ProteinID: XP_047383001
LinkDB
Position
16:13958601..13959217
AA seq 205 aa
MGKGDPKKPKGKISPYAFFLQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKC
EDMAKADKAHYEREMKTYIPPKGETKKKFKDANAPKRPPSAFFLFCSEYRPKIKGEHPGL
SIGDVAKKLGEMWNNTAADDKQPXEKXKLKKKCEKNIAAYRAKGKPDTAKKGVVKAEKSK
KKKEEEEDEEDENEEDEDEEDDDDE
NT seq 618 nt   +upstreamnt  +downstreamnt
atgggcaaaggagatcctaagaagccaaaaggcaaaatttcaccatatgcattctttctg
caaacttgcagggaggagcacaagaagaagcacccagatgcttcagtcaacttttcagag
ttttctaagaagtgctcagagaggtggaagaccatgtctgctaaagagaaaggaaaatgt
gaagacatggcaaaagcggacaaggcccattatgaaagagaaatgaaaacctacatccct
cctaaaggggaaacaaaaaagaagttcaaggatgccaatgcacccaagaggcctccatcg
gccttcttcttgttctgttctgaatatcgcccaaaaatcaaaggagaacatcctggccta
tccattggtgatgttgcaaagaaactgggagagatgtggaacaacactgctgcagatgat
aagcagccttaggaaaagnaaaaactaaagaaaaaatgcgaaaagaatattgctgcctac
cgagctaaaggaaaacctgatacagcaaaaaagggagttgtcaaggctgaaaaaagcaag
aaaaagaaggaagaggaggaagatgaagaggatgagaatgaagaagatgaagatgaagaa
gatgatgatgatgaataa

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