Sciurus carolinensis (gray squirrel): 124966679
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Entry
124966679 CDS
T08117
Name
(RefSeq) tripartite motif-containing protein 55 isoform X1
KO
K10654
tripartite motif-containing protein 55
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
124966679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ncar04121
]
124966679
Ubiquitin system [BR:
ncar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
124966679
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
RING_XB3-XBAT31
zf-B_box
zf-RING_5
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
DegS
Sina_RING
Spectrin_SESTD1
Motif
Other DBs
NCBI-GeneID:
124966679
NCBI-ProteinID:
XP_047384179
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All DBs
Position
1:complement(68491542..68544236)
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AA seq
545 aa
AA seq
DB search
MSASLNYKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNP
YLPTRGGTTVASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKKSD
QPMCEEHEEERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAVLV
GSNDRVQGVISQLEDTCKTIEECCRKQKQDLCEKFDYLYGILEERKNEMTQAITRTQEEK
LEHVRALIKKYSDHLENVSKLVESGIQFMDEPEMAVFLQNAKTLLQKISEASKAFQMEKI
EHGYENMSHFTVNLNREEKIIREIDFYREDEDEEEGGGEGEGEDGEEAAEVEEVENIQIE
SSGEEESPGKASETSQLASELQAVPEALPVSSSEPPPTLPPAVDAPVTQGEVVPTGSQQT
TESETPVPAAAETADPLFYPSWYKGQTRKATTNPPCTPGSESLGHIGPPGSEDSNVRKAE
VAEAVANERATVSGKETSSPAATSQIGFEASPLQGQAAASGSGSGADSEPARHVFSFSWL
NSLSE
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcatctctgaattacaagtctttttccaaagagcaacagaccatggataacttg
gagaagcaacttatctgtcccatctgcctggagatgttcacaaagcctgtggtcattctc
ccctgtcagcacaacctgtgccgaaagtgtgccagcgacattttccaggcctctaacccg
tacttgcccacaagaggaggtaccacagtggcatcagggggccgattccgctgcccctcc
tgtagacacgaagtggttctggacagacacggggtatatggacttcagaggaacctgctg
gtggaaaacatcatcgatatctacaagcaggagtccaccaggccagaaaagaagtctgac
cagcccatgtgtgaagaacatgaagaggagcgcatcaacatctactgtctgaactgtgaa
gtgcccacctgctccctgtgcaaggtgtttggtgcacacaaggattgccaggtggctccc
ctcactcatgtgttccagaggcagaagtcagagctcagtgatggcattgctgttcttgtg
gggagcaatgatcgagtccagggagtgatcagtcagctggaggacacctgtaaaaccatt
gaggaatgctgtagaaaacagaaacaggacctttgtgagaaatttgattacctatatggc
atcctggaggagaggaagaatgaaatgacccaagccatcacccgcacccaagaggagaaa
ctggaacatgtccgtgctctgatcaaaaagtactctgatcatttggagaacgtatcaaag
ttggttgagtcaggaatccagttcatggatgaaccagaaatggcagtgtttctgcagaat
gccaaaaccctgttacaaaaaatctcagaagcatcaaaggcatttcagatggagaaaata
gaacatggttatgagaacatgagccacttcacagtcaacctcaatagagaagaaaaaata
atacgtgagattgatttctacagagaagatgaagatgaggaagaaggaggaggagaagga
gaaggagaagatggagaggaagcagcagaagtagaagaagtggaaaatattcaaatagag
tcatcaggagaagaggaaagtcccggaaaagcctcagagacctctcagctggcctcagag
ctccaggctgtccctgaggcacttccagtttcctcttcagagccacctccaaccctgcca
cctgcagtggatgccccagtgacacagggggaggttgtgcccactggctctcagcagacc
acagagtctgaaactccagtccctgcagcagcggaaactgcggatcccttgttttaccct
agttggtataaaggccaaacccggaaagccaccaccaacccaccttgcaccccagggagc
gaaagtctggggcacatagggcctccaggttctgaggattcaaatgtacggaaggcagaa
gtggcagaagccgtagccaatgagagggcaacagtgagtggtaaggaaactagttcacct
gcagctacttctcagattggatttgaggcctctcccctccagggacaggctgcagcttca
gggagtgggagtggagctgattctgagccagctcgccatgtcttctccttctcctggttg
aactccctgagtgaatga
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