Sciurus carolinensis (gray squirrel): 124967050
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Entry
124967050 CDS
T08117
Name
(RefSeq) spectrin beta chain, non-erythrocytic 4
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
124967050
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ncar04812
]
124967050
Cytoskeleton proteins [BR:
ncar04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
124967050
Intermediate filaments
Intermediate filament-binding proteins
124967050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
PH_11
Rv3651-like_N
FlgK_D1
Motif
Other DBs
NCBI-GeneID:
124967050
NCBI-ProteinID:
XP_047384958
LinkDB
All DBs
Position
16:50073360..50148136
Genome browser
AA seq
2562 aa
AA seq
DB search
MAQVPGEVDNMEGLPAPNNNNPAARWESPDRGWEREPPAASTAAASLFECSRIKALADER
EAVQKKTFTKWVNSHLARVGCHIADLYADLRDGFVLTRLLEVLSGEQLPRPTRGRMRIHS
LENVDKALQFLKEQRVHLENVGSHDIVDGNHRLTLGLVWTIILRFQIQVIKIETEDNRET
RSAKDALLLWCQMKTAGYPEVNIQNFTTSWRDGLAFNALIHRHRPDLVDFSKLTKSNANY
NLQRAFRTAEQHLGLARLLDPEDVNMEAPDEKSILTYVVSFYHYFSKMKALAVEGKRIGK
VLDQVLEVGKIIERYEELAAELLAWIHRTVGLISNQKFANSLSGVQQQLQAFTAYCTLEK
PVKFQEKGNLEVLLFSIQSKLRACNRRLFVPREGCGIWDIDKAWGQLEKAEHEREAALRA
ELIRQEKLELLAQRFDHKVAMRESWLNENQRLVSQDNFGYELPAVEAAMKKHEAIEADIA
AYEERVQGVAELAQALAAEGYYDARRVAAQRDSVLRQWALLTGLVGARRTRLEQNLALQK
VFQEMVYMVDWMEEMQAQLLSRECGQHLVEADDLLQKHGLLEGDIAAQSERVEALNAAAL
RFSHLQGYQPCDPQVICNRVNHVHGCLAELQEQASRRRAELEASRSLWALLQELEEAESW
ARDKERLLEAAGGGGGGAAGAAGGAHDLSSTARLLAQHKILQGELGGRRALLQQALRRGE
ELAAAGGAVGPGAETVQLAGLAERAASARRRWQRLEEAAARRERRLQEARALHQFGADLD
ALLDWLRDAYRLAAAGDFGHDEASSRRLARQHRALTGEVEAHRGPVGGLRRQLATLGGAS
GAGPLVVALQVRVVEAEQLFAEVTEVAALRRQWLRDALAVYRMFGEVHACELWIGEKEQW
LLAMRVPDSLDDVEVVQHRFESLDQEMNSLMGRVLDVNHTVQELVEGGHPSSDEVRSCQD
HLNSRWNRIVELVEQRKEEMSAVLLVENHVLEVAEVRAQVREKRRAVESAPRAGGALQWR
LSGLEAALQALEPRQAALLEEAALLAERFPSQATRLHQGAEELGAEWGALASAAQACGEA
VAAAGRLQRFLHDLDAFLDWLVRAQEAAGGGEGPLPSSLEEADALLARHAALKEEVDQRE
EDYARIVAASEALLAADGAELGPGLALDEWLPHLELGWHKLLGLWEARREALVQAHVYQL
FLRDLRQALAVLRNQEVALSGVELPGTVESVEEAIKRHRDFLTTMELNQQKMQVAVQAAE
GLLRQGNAYGEQAQEAVARLLEKSQENQLRAQQWMQKLHDQLVLQHFLRDCHELDGWIHE
KMLMARDGTREDSHKLHKRWLRHQAFMAELAQNKEWLEKIEREGQQLMQEKPELAASVRK
KLGEIRQCWAELESTTQAKARQLFEASKADQLVQSFAELDKKLLHMESQLQDVDPGGDLA
TVNSQLKKLQSMESQVEEWYREVGELQAQTAALPLEPASKELVGERQNAVGERLVRLLEP
LQERRRLLLASKELHQVAHDLDDELAWVQERLPLAMQTERGSGLQAVQQHIKKNQALRRE
IQAHGPRLEEVLERAGALASLRSPEAEAVRRGLEQLQSAWAGLREAAERRQQVLDAAFQV
EQYYFDVAEVEAWLGEQELLMMSEDKGKDEQSTLQLLKKHLQLEQGVENYEESIAQLSRQ
CRALLEMGHPDSEQISRRQSQVDRLYVALKELGEERRVGLEQQYWLYQLSRQVDELEHWI
AEKEVVAGSPELGQDFEHVSVLQEKFSEFASETGTAGRERLAAVNQMVDELIECGHTAAA
TMAEWKDGLNEAWAELLELMGTRAQLLAASRELHKFFSDARELQGQIEEKRRRLPRLTAP
PEPRPSASSMQRTLRAFEHDLQLLVSQVRQLQEGAAQLRTVYAGEHAEAIASREQEVLQG
WKELLAACEDARLHVSSTADALRFHSQARDLLSWMDGIAGQIGAADKPRDVSSVEVLMNY
HQGLKTELEARVPELTACQELGRSLLLNKSAMADEIQAQLDKLGTRKEEVSDKWDRHWEW
LQQMLEVHQFAQEAVVADAWLTAQEPLLQSRELGSSVDEVEQLIRRHEAFRKAAAAWEER
FSSLRRLTTIEKLKAEQSKQPPTPLLGRKFFGDPTELAAKAAPLLRPGGYERGLEPLARR
ASDTLSAEVRTRVGYVRQELKPERLQPRIDRLPEVPGRVEPAAPPAAQENTVETPGTPAA
AEQVRPRSERQESVDRAEELPRRRRPERQESADQPEEASRRRRPERQESAEHEAAHSLTL
GRYEQMERRRERRERRLERQESSEQETPIRGDLAKGKATLADIVEQLQEKEAGPGLPVGV
PSLPQPRELPPGRLPNGLEPPERTPRPDRPRARDRPKPRRRPRPREGGEGGGSRRSRSAP
AQGGSAPAPPPPPTHTVQHEGFLLRKRELDANRKSSNRSWVSLYCVLSKGELGFYKDSKG
PASGGTHGGEPLLSLHKATSEVASDYKKKKHVFKLQTQDGSEFLLQAKDEEEMNGWLEAV
AASVTEHAEIARWGQTLPTTSSTDEGNPKREGGERRASGRRK
NT seq
7689 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaggttccaggggaggtggacaacatggagggcctgcccgcccccaacaacaac
aaccctgcggctcgctgggagagtccagatcggggctgggagcgggaacctccagctgct
tccacagcagccgcttctctcttcgagtgctcgaggatcaaggccttggcagatgagcgg
gaggccgtgcagaagaagaccttcaccaagtgggtgaactcgcacctcgcccgcgtgggc
tgccacatcgcggacctctatgcggacctccgggatggctttgtgctgacgcggctcctg
gaagtgctgtcgggggagcagctgcccaggcccacacgtggccgcatgcggatccactcc
ctggagaacgtggacaaggccctgcagttcctgaaggagcagcgcgtgcacctggaaaac
gtgggctcccatgacattgtggatgggaatcaccgacttacgctagggttggtctggacc
atcatcctgcgcttccagattcaagtcatcaaaattgagaccgaggacaacagagagacg
cgctcggccaaggacgctctgctcctgtggtgccagatgaagacggccggttacccggag
gtaaacatccagaatttcaccaccagctggcgggatggcttggccttcaatgccctcatc
catcggcacaggcccgatctcgtggacttcagcaaactcaccaaatccaacgccaactac
aacctgcagagagccttccgcacggctgagcagcacctggggctggcgcgcctgctggac
cctgaggatgtgaacatggaggctccggatgagaagtccatcctcacctacgtggtctct
ttctaccactacttctccaagatgaaggctctggctgtggaggggaagcggattgggaag
gttctggaccaggtgttggaggtagggaagatcatagagcgctacgaggagctggcggct
gagctgctggcttggatccaccgcaccgtgggcctcatcagcaaccagaagtttgccaac
tcgctgagtggggtgcagcagcagctccaggccttcacagcctattgcacgctggagaag
cccgtcaagtttcaggagaaggggaacctggaggtattgctcttcagcatccagagcaaa
ctgcgtgcctgtaatcgtcgcctctttgtgcctcgggagggctgtggcatctgggatatc
gacaaggcatggggccagctagagaaggcagagcatgagcgggaggctgccctgagggct
gagctgatccggcaggagaagctggaactcctggctcagaggtttgaccacaaggtggcc
atgagggagagctggctgaatgagaaccagcgcctggtctctcaggacaactttgggtat
gagttgccagcagtggaggcagccatgaagaagcatgaagcgatcgaggcagacattgca
gcctatgaggagcgggtgcagggcgtggcagaactggcccaggcattggcagccgaaggc
tactatgatgcccggcgagtggcagcccagcgtgacagtgtcctgcgacagtgggccctg
ctgactgggctggtaggcgcccggcggacccggcttgagcagaatctggccctgcagaag
gtcttccaggagatggtctacatggtggactggatggaggagatgcaggctcaactgctg
tcccgggagtgtggccagcacctggtggaggcggatgacctgctgcagaagcacgggctg
ctggagggggacattgctgcccagagcgagcgggtggaggccctcaacgccgcagccctg
cgtttctcccacctgcagggctaccagccctgcgacccgcaggtcatctgcaaccgcgtg
aaccacgtgcacggctgtctggcggagctgcaggagcaggcgtcgcggcgtcgcgcggag
ctggaggcctcgcggagcctctgggcgctgctgcaggagctggaggaggcggagagctgg
gcgcgcgacaaggagcgcctcctagaggcggcgggcggcggcggcggcggcgcggcaggt
gcggcgggtggcgcgcacgacctgtccagcaccgcgcgcctcctggcgcagcacaagatc
ttgcagggcgagctgggcgggcggcgggcgctgctgcagcaggccctgcggcgtggcgag
gagctggctgcggccggcggcgccgtgggcccgggcgccgagacggtgcagctggcgggc
ctggcggagcgtgcggcaagcgcgcggcgccgctggcagcggctggaggaggcggcggcg
cggcgggagaggcggctgcaggaggcccgggcactgcatcagtttggcgccgacctcgac
gccctgctggactggcttcgcgacgcttaccgcctggcagccgccggcgacttcggccac
gatgaagcgtccagtcgccgcctggcgcgccagcaccgcgctctcaccggggaggtggag
gcgcatcgcgggccggtgggcggcctgcggcgccagctagcaacactggggggcgccagc
ggtgccggacctctggtggtggcactacaggtgcgtgtggtggaggccgagcagttgttc
gctgaggtgaccgaggtggccgcgctgcggcgccagtggctgcgggacgcgctcgccgtg
taccgaatgttcggcgaggtgcacgcgtgtgagctgtggatcggtgagaaggagcagtgg
ttactcgccatgcgtgtgccggattccctggacgacgttgaggtggtacagcaccgattc
gagagcctagaccaggagatgaacagtctgatgggccgagtcctggatgtgaaccacacg
gtccaggagctcgtggaagggggtcaccccagctcagatgaggtgcgctcctgccaggac
cacctcaacagtaggtggaaccgcatcgtggagctggtggaacagcgcaaagaggagatg
agtgcggtgctgctggtggagaaccacgtgctggaggtagccgaggtgcgcgcccaggtg
cgcgagaagaggcgcgcggtggagagcgcaccccgcgcgggcggcgccctgcagtggcgt
ctcagcggcttagaggctgctttgcaagctctcgagccgcgccaggcggcccttctggag
gaggcagccctgctggccgagcgattcccctcgcaggcaacgcggcttcaccagggcgcg
gaggaactgggtgccgagtggggcgcgctggccagcgcagctcaggcctgcggcgaggcg
gtggcggcggccgggcgcctacagcgtttcctgcatgacctggacgctttcctggactgg
ctcgtgcgcgcccaggaggcggcgggcggcggcgaggggccactgcccagcagcctggaa
gaggcggacgcgttgttggcgcgccacgctgcgctcaaggaggaggtcgaccagcgcgag
gaggactatgcgcgcattgtggcggccagcgaagcgctgctggcggcagacggcgccgag
ctcggcccaggcctggcgctcgacgagtggctgccacacctcgaacttggctggcacaaa
ctgctcggcttgtgggaggcgcgcagggaggcgctggtccaggcgcacgtctaccagctc
ttcctgcgcgacctacgccaagcgctcgcggtgctgcgcaaccaggaggtggccctgtct
ggtgtggagctcccagggacagtggagtcagtggaagaggcgataaaaaggcaccgggac
tttctcaccacaatggagctgaaccagcagaagatgcaggtggccgtgcaggccgccgag
ggcctgctgaggcagggcaacgcctacggggagcaggcccaggaggcagtggcccggctg
ctggagaagagccaagaaaatcagctacgggctcagcagtggatgcagaagctacacgac
cagcttgtgttgcagcatttcctccgagactgccacgagctggatggctggatccatgag
aagatgctgatggcgcgggatggtactcgggaagacagccacaagctgcataagcgatgg
ctccggcaccaggcattcatggccgagctggctcagaataaggagtggctggagaagatc
gagagggagggccagcaactgatgcaggagaagccagagttggcagcctctgtgcggaag
aagctgggtgagatccggcagtgctgggccgaactggagagcaccacccaggccaaggcc
cggcagctctttgaagccagcaaggcagaccagctggtgcagagcttcgctgaactggac
aagaagctccttcacatggaaagccagctgcaagatgtggaccctggtggggacctggct
actgtcaacagccagctcaagaaattgcagtcgatggagtcacaggtggaggagtggtac
cgcgaggtaggagagttgcaggctcagacagcggcgcttcctctggagccggcgagcaag
gagctggtgggcgagcggcagaacgcggtgggcgagcggctggtgcgcttgctcgaaccg
ttgcaggagcgccgccgcttgctgctggcctccaaggagctgcatcaggtggcgcacgac
ctagacgacgagctggcatgggttcaggaacggctaccactggccatgcagacagaacga
ggcagtgggttacaggctgtccagcagcacatcaaaaagaaccaggccctgcggcgggag
atccaggcgcacgggccgcgcctggaagaggtattggagcgcgcgggcgcgctggcctcg
ctgcgcagcccggaggcggaggccgtgcgccgcggcctggagcaactgcagagcgcctgg
gcaggactgcgcgaggcggctgagcggcggcagcaagtgctggacgccgccttccaggtg
gaacagtactacttcgacgtggcggaggtggaggcgtggctgggcgagcaggagctgctc
atgatgagtgaggacaagggcaaggatgaacagagcaccctgcagctgctcaagaagcac
ctgcagctggagcagggcgtggagaactacgaggaaagcatcgcgcagctgtcgcgccaa
tgccgggcgctgctggagatggggcacccagacagcgagcagatcagccggcggcaatct
caggtggaccgcctgtacgtggcgctcaaggagctgggggaggaacgcagggtgggcctg
gagcagcagtactggctgtaccagctcagccgccaggtggatgagctggagcactggatt
gctgagaaggaggtggtggccggttcacccgagctcggccaggacttcgaacatgtctcg
gtgctgcaggaaaagttctcagagtttgccagtgaaacgggcacggcagggcgtgagcgg
ctggcagccgtgaaccagatggtggatgagctgatcgagtgtggccatacggcagcagcc
accatggccgagtggaaggatgggctgaatgaggcctgggctgagttgctggagctcatg
ggtactcgggcccagctgctggccgcctctcgggagctgcataaattcttcagtgatgcc
cgagagcttcaaggacaaattgaggagaagcggaggcgactgccccgcctaactgctcca
cctgagccaagacccagtgccagctccatgcaaaggaccttgcgagcctttgagcacgat
ctgcagctcctcgtgtcccaggtacggcagctgcaggagggggcggcccagctgcggacc
gtgtatgcgggcgagcacgccgaggccatcgccagcagggagcaagaagtgctgcagggc
tggaaagagctgttggcagcctgcgaggacgcccgcctgcacgtcagctcaacggcggac
gccctgcgcttccacagccaggcccgcgacctgctctcctggatggacggcatcgcgggc
cagatcggggcagctgacaagcccagggatgtgtcatcggtggaggtgctcatgaactac
caccagggcctgaagactgagctggaggcacgggtgcctgagctgaccgcctgccaggag
ctggggcgctcccttctgctcaacaagagcgcaatggctgatgagatccaggctcagctg
gacaaactgggaaccaggaaggaggaggtgtcagacaaatgggaccgccattgggagtgg
ctgcagcagatgctggaagtgcatcagtttgcccaggaggcagtggtggctgacgcctgg
ctgacagcccaggagccacttctgcagagccgagagctgggcagcagcgtggatgaggtg
gagcagcttatccggagacatgaggccttccgcaaagcagctgcagcctgggaagagagg
ttcagctctctacgacgcctgaccacgattgagaaactcaaggcggaacagagcaagcaa
ccacctactcccctgctggggcgcaagttcttcggggaccctacggaactggcggcaaag
gctgcgcctctactgcggccagggggctatgagaggggcttggagcccttggcccgccgg
gcctcggacacgctgtcggccgaggtgcggacccgggtggggtacgtgcgccaggagctc
aagcccgagcgcctccagccgcgcattgaccggctgccagaggtccccgggagggtagag
cctgcggcccctccagccgcacaggagaacacggtggagacccccgggacccctgcggcg
gcagagcaggtccggcccagatcggagcgccaggagtcagtagatcgcgcggaggagctg
ccccggaggcggcgacccgagcgccaagaatcggctgatcaacccgaggaggcttcgcgg
aggcggcgacccgagcggcaggaatctgcggaacacgaggcggcacacagccttaccctg
ggccgctatgagcagatggagcggcggcgagagaggcgggagcggcggttggagcggcag
gagtccagcgaacaggagacgcccataagaggagacctggccaaggggaaggccaccctg
gctgacattgtggagcagctgcaggagaaagaggcaggcccggggctccctgttggggtg
ccgtcgctgcctcagcctcgcgagcttccccccggccgcctgcccaacgggcttgaaccg
cccgagcggacacctcggccggatcggccgcgggcgcgggatcggcccaagccgcgacgg
cggccgcggccacgagagggtggtgagggcgggggaagccggcgctcgcgctccgccccg
gcccagggcggctccgcccccgcgcctccgccaccgcccactcacacagtgcagcacgag
ggcttcctgctgcgcaagcgcgagctcgacgctaaccgcaagtcgtccaaccggtcatgg
gtgagcctgtactgcgtcctcagcaagggggagctgggcttctacaaggactccaaaggc
ccagcctcagggggcacacatggtggggagccactgctcagcctgcacaaagccaccagc
gaggtggctagtgactacaagaaaaagaagcatgtcttcaagctccagacccaggatggc
agcgagtttttgctccaggctaaagatgaggaggagatgaacggttggttagaggctgtg
gctgcctcagtgacggaacacgcagagattgcacgctggggtcaaacactacccaccacg
tcctccacagacgagggcaacccgaagcgcgagggaggggagcgcagagccagtggtcgc
cggaagtga
DBGET
integrated database retrieval system
