Sciurus carolinensis (gray squirrel): 124967112
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Entry
124967112 CDS
T08117
Name
(RefSeq) transcriptional repressor CTCF
KO
K23195
transcriptional repressor CTCF
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncar03000
]
124967112
03036 Chromosome and associated proteins [BR:
ncar03036
]
124967112
Transcription factors [BR:
ncar03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
124967112
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
124967112
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_REST
Zf-C2H2_ZNF451_C
zf-C2H2_ZN142
zf-C2H2_7th_ZNF462
zf-met
zf-C2HE
zf-C2H2_6
Zf-C2H2_ZNF451
zf-C2H2_15
zf-WIZ
Motif
Other DBs
NCBI-GeneID:
124967112
NCBI-ProteinID:
XP_047385097
LinkDB
All DBs
Position
16:complement(17712694..17760220)
Genome browser
AA seq
727 aa
AA seq
DB search
MEGEAVEAIVEESETFIKGKERKTYQRRREGGQEEDACHLPQNQTDGGEVVQDVNSSVQM
VMMEQLDPTLLQMKTEVMEGTVAPEAEAAVDDTQIITLQVVNMEEQPINIGELQLVQVPV
PVTVPVATTSVEELQGAYENEVSKEGLTESEPMICHTLPLPEGFQVVKVGANGEVETLEQ
GELPPQEDPSWQKDPDYQPPAKKTKKTKKSKLRYTEEGKDVDVSVYDFEEEQQEGLLSEV
NAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCG
RAFRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYAS
VEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSG
TMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGKKCRYCDAVFHERY
ALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRTHTGEKPYACSHCDKTFRQKQLLDM
HFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENGGETKKSKRGRKR
KMRSKKEDSSDSENAEPDLDDNEDEEEPAVEIEPEPEPQPVTPAPPPAKKRRGRPPGRTN
QPKQNQPTAIIQVEDQNTGAIENIIVEVKKEPDAEPVEGEEEEAQPASTDAPNGDLTPEM
ILSMMDR
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtgaggcggttgaagccattgtggaggagtctgaaactttcattaaaggaaag
gagagaaagacttaccagcgacgccgggaagggggccaggaagaagatgcttgccactta
ccccagaaccagactgatgggggtgaggtggtccaggatgtcaatagcagtgttcaaatg
gtaatgatggaacagctggatcctacccttcttcagatgaagactgaagtaatggagggt
acagtggctccagaagcagaggccgctgtggatgatacccagataataaccttgcaggtt
gtaaatatggaggaacaacccataaacataggagagcttcagcttgttcaagtacctgtt
cctgtgactgtacctgttgctacaacttcagtagaagaacttcagggggcttatgagaat
gaagtgtctaaagagggccttacagaaagtgaacccatgatatgtcacaccttacctttg
cctgaagggtttcaggtggtgaaagtgggggccaatggagaggtggagacactagaacaa
ggggaacttccacctcaggaagatcctagctggcaaaaagacccagactatcagccacca
gccaaaaaaacaaagaaaaccaaaaagagcaaactgcgttacacagaggagggcaaagat
gtggatgtgtctgtctacgattttgaggaagaacagcaggaaggtctgctatcagaggtt
aatgcagagaaagttgttggtaatatgaagcctccaaagccaacaaaaattaaaaagaaa
ggtgtaaagaagacattccagtgtgagctttgcagttacacgtgtccacggcgttcaaat
ttggatcgtcacatgaaaagtcacactgatgagagaccacataaatgccatctctgtggc
agggcattcagaacagtcaccctcttgaggaatcaccttaacacacacacaggtactcgt
cctcacaagtgcccagactgtgacatggcctttgtgaccagtggagaattggtgcggcat
cgtcgttacaaacacacccacgagaagccatttaagtgttccatgtgtgattatgccagc
gtagaagtcagtaaattaaaacgtcatattcgctctcatactggagagcgtccgttccag
tgcagtttgtgcagttatgccagcagggacacatacaagctgaaaaggcacatgagaacc
cattcaggagaaaaaccttatgaatgttatatttgtcatgctcggtttacccagagtggt
accatgaagatgcacatcttacagaagcacacagaaaatgtggccaaatttcactgtccc
cactgtgacactgtcatagcccgaaaaagtgatctgggtgtccacttgagaaagcagcat
tcctatattgagcaaggcaagaaatgccgttactgtgatgctgtatttcatgagcgctat
gccctcatccagcaccagaaatcacacaagaatgagaaacgctttaagtgtgaccagtgt
gattatgcttgtaggcaggagaggcacatgatcatgcacaagcgtacccacacgggggag
aagccttatgcctgcagccactgcgacaagacatttcggcagaaacagctcctcgacatg
cacttcaagcgttatcatgaccccaactttgtccctgcggccttcgtctgttctaagtgc
gggaaaacatttacacgtcggaataccatggcaagacatgctgataattgtgctggtcca
gatggtgtagaaggagaaaatggaggagaaacaaagaaaagtaaacgtggaagaaaaaga
aagatgcgctctaaaaaagaagattcctctgatagtgaaaatgctgagccagatctggat
gataatgaggatgaggaggaacccgcagtagaaattgaacccgagccagaacctcaacct
gtgaccccagccccaccacctgccaagaagcggagagggcgtccccctggcagaactaac
cagcccaaacagaaccagccaacagccatcattcaggttgaagaccagaatacaggtgca
attgagaacattatagttgaagttaaaaaagagccagatgctgagcctgtggagggggag
gaagaggaggcccagccagccagcacagatgcccccaacggggacctcacgcctgagatg
atcctcagcatgatggaccggtga
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