Sciurus carolinensis (gray squirrel): 124967137
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Entry
124967137 CDS
T08117
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124967137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124967137
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124967137
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124967137
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Cluap1
DUF4407
PI3K_P85_iSH2
Motif
Other DBs
NCBI-GeneID:
124967137
NCBI-ProteinID:
XP_047385143
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Position
16:63995053..64010689
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AA seq
752 aa
AA seq
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MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDQKQDRIEGLKRHIEKHRYH
VRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALV
ATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQS
PAKNGSKPVHSNQHPQSPAVPPTYPAGPPPAASALSTTPGNNGASAPAAPPSALGPKASP
APSHNSGTPAPYAQAVAPPAPSGPNAAQPRPPSAQPGGGGGGGGGGSGSNSNSSTGGGAG
KQNGATSYSSVVADSPAEVALSSSGGSNASSQALGPTSGPHNPPPSTSKEPSAAAPTGAG
GVAPGSGNNSGGPSLLVPLPVNPPSSPTPSFSEAKAAGALLNGPPQFSTTPEVKAPEPLS
SLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASTQPPLQLSEVNIPLSLGVCP
LGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVE
FYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQ
GTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaagcgcaagctccaaggtgagattgatcgctgcctcaagaaagtgtccgag
ggtgtggagcagtttgaagatatttggcagaagctccacaacgcagccaacgcgaaccag
aaagaaaagtatgaggctgacctaaagaaggagattaagaagctacaacggctgagggac
cagatcaagacatgggtagcgtccaatgagatcaaggacaaaaggcagcttattgacaac
cgcaagctcatcgagacgcaaatggaacggttcaaagttgtggaaagagagaccaaaacc
aaagcttatagcaaggagggcctgggcctggcccagaaggtagatcccgcccagaaggag
aaggaagaggttggccagtggctcacgaataccatcgacaccctaaacatgcaggtggac
cagtttgagagtgaggtggaatcgctgtcggtgcagacccgcaagaagaagggcgacaag
gatcagaagcaggaccggatcgagggcttgaagcggcacattgagaagcaccgttaccac
gtgcgcatgctggagaccatcctgcgaatgctggacaacgactccatccttgtcgatgcc
atccgcaagatcaaggacgatgtcgagtactacgtcgactcctcccaggaccctgacttc
gaggagaatgagttcctctatgacgatttggatctcgaggacattccacaggcgctggtc
gccacctccccccccagccacagccacatggaggacgagatcttcaaccagtccagcagc
acacccacctcgaccacctccagctctcccatcccccccagcccagccaactgcactacg
gagaactctgaagatgataagaagagaggacgctcgacagatagtgaagtcagccagtct
ccagccaaaaatggttccaagcctgtccacagcaaccagcatccccagtccccagctgtg
ccacccacctaccctgctggtcccccacctgctgcctctgccttgagcaccacccctggc
aacaatggggcctctgccccagcagcacccccaagtgccctgggccccaaggccagtcca
gctcccagccacaactcgggcacccctgccccctatgctcaggctgtggccccaccagcc
cccagtgggcccaatgctgcccagccccgaccccccagtgcccagcctggcgggggtggc
ggtggcggtggcggagggagtggcagtaatagtaacagcagcacaggtggaggggctggc
aagcagaacggtgccaccagttacagctcagtcgtggcagacagccctgcagaggtggcc
ctgagcagcagtgggggcagcaatgctagcagccaggccctgggccccacctcaggtccc
cacaacccacctcctagcacctcgaaggaacccagtgcggcagccccaacaggggctgga
ggtgtagccccaggctcagggaacaactcagggggacccagcctcctagtgccactgcct
gtgaacccccccagctccccaacacccagcttcagtgaggccaaggcagccggtgccctg
cttaatggacctccacagtttagcaccaccccagaagtcaaggctcctgagcctctgagc
tccctgaagtccatggcagagcgggcagccatcagctctggcattgaggaccctgtgcca
acgttacacctaacagagcgagacatcatcctgagcagcacatcagcacctccggcctcc
acccagccacccctgcaactgtcagaggtgaacataccactgtcgctaggcgtgtgtcca
ctggggccagtgcccctcaccaaggagcagctctaccagcaggccatggaggaggctgcc
tggcaccacatgccccacccctctgactccgaacgcatccggcagtaccttccccggaac
ccttgcccgacgcccccctaccaccaccagatgccacccccacactcggacaccgtggag
ttctaccagcgcctgtcaactgagacgctgttcttcatcttctactatctggagggcact
aaagcacagtacctggcagccaaggccctaaagaagcagtcatggcgattccacaccaag
tacatgatgtggttccagaggcacgaggagcccaagaccatcaccgacgagtttgagcag
ggcacctacatctactttgactacgagaagtggggccagcggaagaaggaaggcttcacc
tttgagtatcgctacctggaggaccgggacctccagtga
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