Sciurus carolinensis (gray squirrel): 124967219
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Entry
124967219 CDS
T08117
Name
(RefSeq) brevican core protein isoform X1
KO
K06795
brevican
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ncar00535
]
124967219
00536 Glycosaminoglycan binding proteins [BR:
ncar00536
]
124967219
04091 Lectins [BR:
ncar04091
]
124967219
Proteoglycans [BR:
ncar00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
124967219
Glycosaminoglycan binding proteins [BR:
ncar00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
124967219
Lectins [BR:
ncar04091
]
C-Type lectins
Lecticans
124967219
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
V-set
EGF
Sushi
hEGF
Ig_2
EGF_2
ig
I-set
EGF_3
Ig_3
Izumo-Ig
Motif
Other DBs
NCBI-GeneID:
124967219
NCBI-ProteinID:
XP_047385260
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All DBs
Position
1:complement(93538899..93556409)
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AA seq
916 aa
AA seq
DB search
MASPLLAGLLTALALTQVPAVLADVLEGDSSEDRAFRVRIAGAAPLQGVLGGDLTIPCHV
HYLRPPPSRRAVLGSPRVKWTFLSGGREAEVLVARGLRVKVNEAYRFRVALPAYPASLTD
VSLVLSELRPNDSGIYRCEVQHGIDDSSDAVEVKVKGVVFLYREGSARYAFSFAVAQEAC
ARIGARIATPEQLYAAYLGGYEQCDAGWLSDQTVRYPIQTPREACYGDMDGFPGVRNYGV
VDPDDLYDVYCYAEDLNGELFLGAPPDKLTLEEARAYCRERGAEIATTGQLYAAWDGGLD
RCSPGWLADGSVRYPIVTPSQRCGGGLPGVKTLFLFPNQTGFPNKHSRFNVYCFRDSAHP
SAIPEVSNPASDPGSDGLEAIVTVTETLEELQLPQEAMESESRGAIYSIPIMEDGGGGSS
TPEDPAEAPRTLEFETQSIVPPTGSSDHEDKALEEEERYEDEDEAEEEEEEEVEEDEDLW
AWPNEFSSPLPTELDAEESLSQASPPARAVLQPGASPPPDGESEAPRVHGPPTETLPTPR
EGTLASPQPSTLVGVREVGEEIGGPELSEAPRGESEETGSSEDATSLPPVTQAPEGTREL
EVPSEENSGRTVPAGTSVQAQPVLPTDSASRGGVAVAPSSGDCVPSPCHNGGTCLEEEEG
VRCLCLPGYGGDLCDVGLRFCSPGWDAFQGACYKHFSTRRSWEEAETQCRMYGAHLASIS
TPEEQDFINNRYREYQWIGLNDRTIEGDFLWSDGVPLLYENWNPGQPDSYFLSGENCVVM
VWHDQGQWSDVPCNYHLSYTCKMGLVSCGPPPELPLAQVFGRPRLRYEVDTVLRYRCREG
LAQRNLPLIRCQENGLWEPPQISCVPRRPVSARRRQARALHAVKIPEEYQGRLPGRWKAL
WTLPSSPTSGPEGRKP
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atggcctcaccccttctggcaggcctgctgacagccctggccctaacccaggtccctgca
gtcctcgctgatgtcctggaaggggacagctcagaggaccgcgccttccgcgtgcgtatc
gccggcgccgcgccgctgcagggagtgctgggaggcgacctcactatcccttgccacgtt
cactacctgcggccgccgccgagccgcagggcggtgctgggatctccgcgggtcaagtgg
accttcctgtccgggggccgggaggcggaggtgctggtagcgcgggggctgcgcgtcaag
gtgaacgaggcctaccggttccgcgtggcgctgcctgcctaccccgcgtcgctcaccgat
gtctccctggtgttgagcgagctgcggcccaacgactcaggaatctaccgctgcgaggtc
cagcacggtatcgatgacagcagtgatgctgtggaggtcaaggtcaaaggggtcgtcttt
ctctaccgggagggctctgcccgctatgctttctcctttgcggtggcccaggaagcctgt
gctcggattggagctcgcatcgccacaccagaacagctctatgctgcctacctagggggc
tacgagcagtgtgatgctggctggctgtcggaccagaccgtgaggtatcccatccagacc
ccacgagaggcctgctatggagacatggacgggttccctggggtccggaactatggagtg
gtggacccagatgacctctatgatgtctactgttatgctgaagacctaaatggagaactg
ttcctaggtgcccctccagacaagctgacgttagaggaggcacgggcatactgccgggag
aggggtgcagagattgctaccacgggccagctatatgcagcctgggatggtggcctggac
cgctgcagcccaggctggctggctgatggcagcgtgcgctaccccatcgtcacacccagc
cagcgctgtggtggaggcctgcccggtgtcaagaccctcttcctcttccccaaccagact
ggcttccccaacaagcacagccgcttcaacgtctactgtttccgagactctgcccatccc
tctgccatccctgaggtctccaacccagcctctgacccaggctctgatggactagaggcc
attgtcacagtgacagagaccctggaggaactgcagctgcctcaggaagctatggagagc
gagtcccgtggagccatatactccattcccatcatggaggatggaggaggtggaagctcc
actccagaagaccccgcagaggcccccaggaccttagaatttgaaacccaatccattgta
ccacccaccgggtcctcagaccatgaagacaaggcattggaggaagaagagagatatgag
gatgaagacgaggcagaggaggaggaagaagaggaggtggaggaggatgaggacctgtgg
gcatggcccaacgagttcagtagccctcttcccactgagctggatgcagaggagtcgctg
tcccaggcatccccgccagcaagggcagtcctgcagccgggtgcatcaccacctcctgac
ggagagtcagaagctcccagggtccatggaccacctaccgagactctgcccactcccagg
gaggggaccctagcatccccacaaccttccactctggttggggtgagagaggtcggggag
gaaattgggggtcctgagctatctgaggcccctcgaggagagagtgaagagacagggagc
tccgaggatgccacttccctgcctccagtcacacaggcccctgagggtaccagggagctg
gaagttccctctgaagagaactctggaagaactgtccctgcagggacctcagtgcaggcc
caaccagtgctgcccactgacagtgccagccgaggtggagtggcggtggccccttcatca
ggtgactgtgtccccagcccctgccacaatggtgggacatgcttggaggaggaggagggg
gtccgctgcctatgtttgcctggctatgggggggacctgtgcgatgttggcctccgcttc
tgcagtccgggctgggacgccttccaaggcgcctgctacaagcacttttctacacgaaga
agctgggaggaggcggagacccagtgccggatgtacggcgcgcacctggccagcatcagc
acgccggaggaacaggacttcatcaacaatcgataccgggagtaccagtggatcggcctc
aatgacaggaccattgaaggcgacttcctgtggtcggatggcgtccctctgctctatgag
aactggaaccctggacagcctgacagctacttcctgtctggagagaactgcgtggtcatg
gtgtggcatgatcagggacaatggagcgatgtgccctgcaactaccacctgtcctacacc
tgcaagatgggcctggtgtcctgtgggcccccaccggagctgcctctggctcaagtgttc
ggccgcccacggctgcgctatgaagtagacactgtgcttcgctatcggtgccgggagggg
ctggctcagcgcaacctgccactgatccgctgccaggagaacggtctttgggagccccct
cagatctcttgtgtgccccgtaggcctgtgagtgccaggaggaggcaggcccgtgctctg
catgcagtgaagatcccagaagaatatcaaggaaggctgccggggcgctggaaggcactg
tggacccttccttccagccctacatccggtcctgaagggagaaagccttga
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