Sciurus carolinensis (gray squirrel): 124967427
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Entry
124967427 CDS
T08117
Name
(RefSeq) TATA box-binding protein-associated factor, RNA polymerase I, subunit C-like isoform X1
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncar03021
]
124967427
Transcription machinery [BR:
ncar03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
124967427
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
TAF1C_HB
TAF1C_beta-prop
TAF1C_C
Motif
Other DBs
NCBI-GeneID:
124967427
NCBI-ProteinID:
XP_047385663
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All DBs
Position
16:3895390..3903988
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AA seq
850 aa
AA seq
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MDFPSSLCPSLFTAGPLGTSDAPDLSFMCSWRDALTLPESQPQDAKDAVLHLATNLLWEP
VVPGPLPLLPPAPDPWDPGVTAQDLLFRGGYHYRRQPQVVLDVTEQLSRFLWDHGDIAFA
PLGKLMLENFKLEGARSRSKKMTVVSVKRLLQDLGGHQPWGCPWACISHRQRRFSILGGP
VLNRSVSSLLGKLLHEELTLRWERLLLDEAFTGGALAWVPGRTARVGQMVYPAGGALDKL
CFQEVSLTSGGNPRVLGDPGCIQLQGPVRQVVTCTVQGETLLAVRSDYHCAVWKVSKQEP
PTPLQVLQVEKGATGISLSPHLPGELAICSRSGAVCLWTPEDGPPDTLPQLAISPRLQQV
YKDSETLVFRDPSPWRWADFTAHPRVLTVGDRTGVKIVDTQGPPGCGLLLFRGGAEASCQ
KGERVLVTQYLGQANSGCLPPTLHLVCTQLSLYLMDERLPLVPVLKWDHGLPSPPLLTRL
LPPPGPGCPQPLLLGGQGGQLQLLHLTGAGSSTPRLAGPPQSLPSRTSSLSAFPLLEPKS
QGQLQERLKAPTIGLAATVTHCASVPVLLVFQLSEAGDVFFQPFRLHRDPEPPGDPRPTC
PAPEATASPQDPTPKPPTPSWTSQAITRCSRWLEALLEVPPAPAVWVAPTFSHRRLVGRM
EPQKDEGRVPQGLRAAMAEERLLQRRDLGSPPRAEPPPAPESGPQDELTERLGAAWEGQG
AAWWEKRQGRTSGPEGRARRPKRRSQLSNTFSSLTSGLDLPDASSPPRSPNQTSSEARPH
PTGTPHSQELSQELWPQGIPSERRQTLRSYMAKLPLPKDTPGHSPTPASQQHTPALTGSR
PHRKKPRMGF
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atggacttccccagctccctctgtccctcgttgtttacggctggcccccttggtacaagc
gatgcccctgacctgtccttcatgtgcagctggagagatgccctgacactgccagagtcc
cagccccaggatgccaaggatgccgtactgcacttggccacgaacctgctgtgggagcct
gtggtgcctgggcccctgcctctgctgcctcctgctcctgatccctgggaccctggtgtg
actgcccaggacctccttttccgaggaggttaccactaccggagacagccccaggtggtg
ctggatgttactgagcagctcagccggttcctgtgggatcatggggacatagcctttgca
ccactggggaagctgatgctggaaaatttcaaactggagggcgcccgcagccgctccaag
aagatgacagtggtcagcgtgaagaggctgctgcaggaccttggtggacaccagccctgg
gggtgtccctgggcatgcatcagccatcggcagcgccgcttctccatcctcgggggccca
gtgctgaacaggtcggtttccagcctcctgggcaagctgctgcatgaggagctgaccctg
cgctgggagcggctactcctggacgaggccttcaccgggggcgccttggcctgggtgcct
ggaaggacagcgcgggtgggccagatggtctaccctgcaggaggtgccctggacaagctg
tgtttccaggaggtcagtctgacgtcaggtggcaatcctcgggtccttggggaccctggg
tgcatccagctacagggacctgtccggcaggtggtgacctgcactgtccagggagaaact
ctgctggccgtccgctccgactaccactgtgccgtgtggaaggtcagtaagcaggaacca
ccgacgcccctgcaggtgctgcaggtcgagaagggggccacggggatcagtctcagccct
cacctgcccggggagctggccatctgtagccgttctggagccgtctgtctgtggacccct
gaggacggacccccagacaccctcccacagcttgccatctccccaaggctgcagcaggtc
tacaaggactccgagacgcttgtgttccgggacccttctccctggcgctgggccgacttc
actgcccaccctcgggtgctaactgtgggtgaccgcactggggtgaagatagtggacact
cagggcccaccaggctgcggactgctgcttttccgtgggggagcagaggcctcctgtcag
aaaggagaacgtgtcctggtcacccagtacctggggcaggccaactctggctgccttcct
cccaccctccatctcgtctgtacccagctctcgctctacctgatggacgagcgcctgccc
ctggtgccggtgctgaagtgggaccacggcctcccttccccgcccctgctgacccgcctg
ctgcctccacccggccctggctgcccgcaacccttgctcctgggaggccagggggggcag
ctgcagctgctgcacctcacaggagcggggtcctccacaccccggctggcaggacccccc
cagtctcttccctccaggaccagttctctctccgcatttcccctcctggaacccaagagc
caggggcagttgcaggagcgtctcaaagctccaaccataggtctggccgccactgtcaca
cactgtgcttctgtgccagtcctgttggtcttccaactctccgaggctggagacgtcttc
ttccagcccttccgcctccaccgagaccccgagcctcctggtgaccccaggcccacctgc
cctgcacctgaggccacagcatccccccaggacccaactcccaagcctcccacaccctcc
tggacttcccaggccatcacccgctgcagccgctggctggaggccctgctggaggtgccc
cctgctcctgctgtgtgggttgcacccaccttctcccaccgccgcctggtaggccgcatg
gagccacaaaaagatgaagggagagtgccacagggcctccgggcagccatggccgaagag
cggctcctgcagcggagggacctgggctcaccacccagggcagagccgccccctgcaccc
gagtcaggcccacaggatgagctcactgagcgtttgggggctgcctgggaaggccagggg
gctgcttggtgggagaagcggcagggcaggacctctgggcctgagggacgggccaggcgg
cccaaacgccggagccagctctctaacacgttctcctcactcaccagcggcttggacctc
ccagatgccagcagcccccctcgcagcccaaaccagacatcctcagaggccaggcctcac
cccacagggaccccgcactcccaggagctgagccaggagctgtggccccaaggcatcccc
tcagagcggcggcaaaccctccgcagctacatggccaagctcccacttccaaaggacacc
ccaggacatagcccaacacccgcctcccagcagcacacacctgccctgactggctcacgg
ccccacaggaagaagccacgaatgggtttctga
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