Sciurus carolinensis (gray squirrel): 124967470
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Entry
124967470 CDS
T08117
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124967470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124967470
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124967470
mRNA degradation factors
5'-3' decay
Decapping complex
124967470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_TEP1_2nd
DUF445
WD40_CDC20-Fz
Beta-prop_HPS5
WD40_Prp19
WDR55
Motif
Other DBs
NCBI-GeneID:
124967470
NCBI-ProteinID:
XP_047385748
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All DBs
Position
16:complement(17497506..17508718)
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AA seq
1402 aa
AA seq
DB search
MASCTSIDIEDATQHLRDILKLDRPAGGPSAESQRPSSAYNGDLNGLLVPDPLCSGDGTS
TSKPGLRIMPPINLQEKQVICLSGDDSSTCIGIFAKEVEIVASSDSSISSKARGSNKVKI
QPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSVA
DLAFAHLNSPQLACLDEAGNLFVWRLALVNSKIQEEILVHIRQPEGTPLNHFRRIIWCPF
IPEESEDCCEESSPTVALLHEDRAEVWDLDMLRSSHSTWPVDVSQIKQGFIVVKGHSTCL
SEGALSPDGTVLATASHDGYVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQ
DPEVPFWRFLITGADQNRELKMWCTVSWTCLQTICFSPDIFSSVSVPPSLKVCLDLSAEY
LILSDVQRKVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPA
EEENDSLGAEGSHGAGTMESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPTHTA
HEDFAFGESRPELGSEGLGSATHGSQPDLRRIVELPAPSDFLTLSSETKPKLMTPDAFMT
PTASLQQITASPSSSSSSSSSSSSNSSSSSLTAVSAVSSTSAVDPSLPRPPEELTLSPKL
QLDGSLTMSNSSSLQASPRSLLPSLLPGPGEKLTPKVPGQVSATASALSLELQEVEPLGL
PQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSASEGLEPDSMASAASALHLL
SPRPRPGPELGPQLGLDGGPGDGDRHSTPSLLEAALTQESAPADSQVWPTAPDITRETCS
TLAESPRNGLQEKHKSLAFHRPPYHLLQQHDSQDTSAEQSDHDDEVASLAAASGGFGTKI
PTPRLPAKDWKTKGSPRTSPKIKRKSKKDDGDSAMGSRLTEHQVAEPPEDWPALIWQQQR
ELAELRHSQEELLQRLCAQLEGLQNTVTGHVERALETRHEQEQRRLERALAEGQQRGGQL
QEQLTQQLSQALSSAVAGRLERSIRDEIKKTVPPCVSRNLEPVAGQLSNSVATKLTAVEG
SMKENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQIND
SFRLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVSTLQSATEHMAATVSSSVRAE
VQHQLHVAVGSLQESILAQVQRIVKGEVSVALKEQQAAVTSSIMQAMRSAAGTPVPSAHL
DCQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPAQVFGQPPCPLSQPVLL
SLIQQLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAEPHN
SLGKAARRLSLMLHGLVTPSLP
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctgcacgagcatcgacatcgaggacgccacgcagcacctgcgggacatcctc
aagctggaccggcctgcggggggccccagtgcagagagccagcggccatccagtgcctac
aatggggacctcaatgggctcctggtaccagaccccctctgctcaggtgatggtacctca
acaagcaagcctggtctgcggatcatgccacccattaacctgcaggagaaacaggtcatc
tgcctttctggagatgacagctccacctgcattgggattttcgccaaggaggtggagatt
gtggccagcagtgactccagcatttcaagcaaggcacgtgggagcaacaaggtgaaaatc
cagcctgtcgccaagtatgactgggagcagaagtactactacggcaacctgattgctgtg
tccaactccttcttagcctatgctattcgggctgccaacaatggctcagcaatggtgcga
gtgatcagtgtcagcacttcagagcggaccctactcaagggcttcacaggcagtgtggct
gatctggcttttgcacacctcaactctccacagctggcctgccttgatgaggcaggcaac
ttgttcgtatggcgcttggctctagttaacagcaaaattcaagaagagatcttggtccat
atccgacagccagagggcacgccactgaaccacttccgaaggatcatctggtgccccttt
attcctgaggaaagtgaggactgctgtgaggagagtagcccaaccgtggccctgctgcat
gaagatcgggctgaggtgtgggacctggacatgctccgctccagccacagcacctggcct
gtggatgtcagccaaatcaagcaggggttcattgtggtaaaaggccacagcacgtgtcta
agtgaaggagccctctctcctgatgggactgtcctagctactgcaagtcatgatggctat
gtcaagttctggcagatctacattgaggggcaggatgagccacggtgtctgcatgagtgg
aagcctcatgatgggcggcctctctcctgcctgctgttctgtgacaatcataagaaacag
gaccctgaggttccattctggaggttcctcattactggtgctgaccagaatcgggagttg
aagatgtggtgcacagtgtcctggacctgcctacagaccatttgtttctctccagatatc
ttcagctcagtgagtgtgccccccagtctcaaagtttgcttggatctatcagcagaatac
ctgattctcagtgatgtgcaacgaaaggtcctgtacgtgatggagctgctgcaaaaccag
gaggagggccgtgcgtgcttcagctccatttcggagttcctgcttacccatcctgtgctg
agctttggcattcaggttgtgagtcgctgccggctgcggcacactgaggtgctgcctgct
gaggaggaaaatgacagcttgggagctgagggttcccatggagctggtaccatggagtct
gcagctggtgtactcatcaagctcttttgtgtgcatactaaggccctgcaagatgtacag
atccgtttccagccacaactgaaccctgatgtggtggctccacttcccacccacactgcc
catgaggactttgcctttggagagtctcggcctgaactgggctctgagggcctgggatca
gccactcatggctcccagcctgaccttcgtcgcattgtggagctgcctgcaccttcggac
ttcctcactctgagcagtgagaccaagcctaagctgatgacacctgacgccttcatgaca
cccactgcatccctgcagcagatcactgcatcccctagcagtagcagcagcagtagcagt
agcagcagcagtaacagcagcagcagctctcttacagctgtgtctgctgtgagcagcacc
tcagctgtggatccctccttgcccagaccacctgaggagttgaccttgagccccaaactg
cagctggatggcagcctgacaatgagcaacagtagcagcctgcaggcaagcccacgcagc
ctcttgcccagcctgcttccaggcccaggcgaaaaattgactcccaaagtgccggggcag
gtatccgctactgcctctgcactgtccctggaactgcaggaagtggagcccttggggcta
ccccaggcctcccccagtcgcactcgctcccctgatgttatatcctcagcttccactgcc
ctgtctcaggacatccctgagatagcatctgaggccctgtcacgtggctttggctcctct
gcttctgagggccttgagccagacagtatggcttcagctgcctcagcactgcacctgctg
tccccacggccccggccaggacccgagcttggcccccagcttggtctggatggaggtcct
ggggatggggatcgacatagtaccccctcactcctggaagcagccttgacccaggagtct
gcccccgctgacagtcaagtctggcctacggcacctgacattactcgggaaacctgtagt
accctagcagagagccccaggaatggcctccaggaaaagcataaaagtctggccttccac
cgaccaccttatcatctgctgcagcaacatgatagccaggacaccagtgctgaacaaagt
gaccatgatgatgaggtagccagtcttgccgctgcctcaggaggctttggcaccaaaatt
cccactccccggctgcctgccaaggactggaagaccaagggatcccctcggacctcaccc
aagatcaagagaaaaagcaagaaggatgatggggattcagccatgggatcccgactcaca
gaacaccaggtggcagagccccctgaggactggccagcactaatttggcagcagcaaaga
gagctggcagagctgcggcacagccaagaagagctgctgcagcgtctgtgtgcccaactt
gaaggccttcagaacactgtcacaggccatgtagaacgtgcccttgagacacggcatgag
caggaacagcggcggctagagagagcactggctgaggggcagcagcgtggcgggcagctg
caggagcagctgacacaacagctgtcccaggcactatcttctgctgtggctgggcggctg
gaacgtagcatacgggatgaaatcaaaaaaacagttcctccatgtgtctccaggaatctg
gagcctgtggcaggccaactgagcaattcagtggctaccaaactcacagctgtagagggt
agcatgaaagagaacatctccaagctactcaagtccaagaatttgacagatgctatcgcc
cgagcagctgcagacacattacaggggccaatgcaggctgcctaccgtgaagccttccag
agtgtggtgctgcctgcctttgaaaagagctgccaggccatgttccagcagatcaatgat
agcttccgactgggcacacaggaatacttgcagcagctagagagccacatgaagagccgg
aaggcacgggaacaggaggccagagagcctgtgcttgcccagcttcggggcctggtcagc
acactgcagagtgctactgagcatatggcagccactgtatctagcagtgttcgggctgag
gtacaacaccagctgcacgtggctgtgggcagcctgcaggagtcaattttagcacaggta
cagcgcattgttaagggtgaggtgagtgtggcactcaaggaacagcaggctgccgtcacc
tccagtatcatgcaggccatgcgctcagctgctggcacacctgtcccttctgcccacctc
gactgccaggcccagcaagcccatatcttgcagctgctacagcagggccacctcaatcag
gccttccagcaggcgctgacagctgctgacctgaacctggtgctgtatgtttgtgaaaca
gtggacccagcccaggtttttgggcagccaccttgcccactctcccagcctgtgctcctt
tccctcatccagcaactggcatctgaccttggcactagaactgacctcaaactcagctac
ctggaagaggctgtgatgcacctggaccacagtgaccccatcactcgagaccacatgggc
tctgtcatggcccaggtgcgccagaagctctttcagttcctgcaggctgaaccacacaac
tcactcggcaaagcagcccggcgtctcagcctaatgctgcatggccttgttacccccagc
ctcccttag
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