Sciurus carolinensis (gray squirrel): 124967601
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Entry
124967601 CDS
T08117
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ncar03036
]
124967601
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
124967601
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
HTH_CHD1_Hrp3
Motif
Other DBs
NCBI-GeneID:
124967601
NCBI-ProteinID:
XP_047386015
LinkDB
All DBs
Position
16:complement(30233044..30470976)
Genome browser
AA seq
2896 aa
AA seq
DB search
MTDPMMDFFDDANLFGETLEGLSDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVHGTP
THQKMTDFEQLNQFDSMKFHQVNQSFGSPAEHVLSPHSQFNCSPIHPPNQPNGLFPDVAD
GSPMWGHQTATNISNQNGSPFHQQGHSHSMHQNKSFVAHHDFALFQANEQQTQCTSLRSQ
QNRNNLTPGQNSLNHSINVSGPHRVSVNHPPQITNASTSQQSLSMQFSQTSNPSVHFLKC
NNHQEGNFNGPSPNMTSCSVSNSQQFSSHYSFSNNHISPNSLLQSSAVLAPNHANQTLSD
FSGSNSFSPHRGIKQESTQHILNPNASLNSNNFQMLHSSHPQGNYSNSKLSPVHMNFPDP
VDSGTQMGHFNDHVETNGFSSLEDNLLHQVESQTEPFTGLDPEDLLQEGLLPQFDESTFG
QDNSNHALDHDLDRHFTSHIVARPSDMAQTQLQCQARSWHSSFSNHQHLHDRNRLCLQRQ
PPSSKKNDGSGTYTKLQNTQVRVMTEKKQRKKVESESKQEKANRIISEAIAKAKERGERN
IPRVMSPENFPSASVEGKEEKKGRRTKSKPKDKDNKKIKTCSKLKEKTKIGKLIITLGKK
QKRKNESSDEISDAEHMPSHAFKDQDSQKRRSNRQIKRKKYAEDAEGKQSEEEVKGSMKI
KKNSAPLPGEQPLQLFVENPSEEDAAIVDKILSSRIVKKEISPGVMIDTEEFFVKYKNYS
YLHCEWATEEQLLKDKRIQQKIKRFKLRQAQRAHFFADMEEEPFNPDYVEVDRVLEVSFC
EDKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDLAKIEEFEQLQALRPDTRHLDRPPSNI
WKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEILL
TGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMIQQYEMYFRDSQGRIIR
GAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLL
TGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKE
DVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCC
NHPYLIKGAEEKILGEFRDTYNPTATDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIF
SQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLG
INLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKL
GLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCEEDIDQILL
RRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIDAISGRNSLV
IDTPRIRKQTRPFSATKDELAELSEAESEGDEKPKLRRPCDRSNGYGRTECFRVEKNLLV
YGWGRWREILSHGRFKRQLNEHDVEIICRALLAYCLVHYRGDEKIKGFIWDLITPTEDGQ
TRELQNHLGLSAPVPRGRKGKKVKTQTSSFDIQKAEWLRKYNPEQLLQDEGYKKHIKHHC
NKVLLRVRMLYYLKQEVIGNECQKVFDGVDASDIDVWVPEPDHSEVPAEWWDFDADKSLL
IGVFKHGYEKYNTIRADPALCFLERVGKPDDKAVAAEQRANDFMDGDVEDPEYKPAPAIF
KDDIEDDVSSPGDLVIADGDGQLMEGDKIYWPTQSALTTRLRRLITAYQRTNKNRQIQQI
QPTFSVPASVMHPLYEEATLNPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDPDRGQF
DWTKFRAMARLHKKTDESLEKYLYAFMSMCRRVCRLPSKEELVDPNIFIQPITEERASRT
LYRIELLRKVREQALRHPQLFERLKLCHPNPDLPVWWECGPHDRDLLIGAAKHGVSRTDY
HILRDPELSFMAAQRNYSQSKMTHSRTSTPLLQQYQVALSASPLTSLPRLLDAKGIILED
MKVKSETLKEEPQSSEEESMSSVETRTLIKSEPVSPKNGVLSQATGDQKSGGKVETDRRM
VAARTEPLTPNPASKKQRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSSCSHSRSGS
SSSSSSSCSSASSSSSSSSSSSSSSSSSSEESDSEEEEVQKRAESTPHMKAYDEESVASL
STTQDETQDSFQINNGTPESAYLLQGGYMLAASYWPKDRVMINRLDSICQTVLKGKWPSA
RRSYDANTVASFYTTKLLDSPGAATEYSESSVPTPPGAGVKEEHDQSTQMSKVKKHVREK
EFTVKIKDEGGLKLTFQKQGLAQKRPFDSEDGALGQQQYLTRLRELQSASETSLVNFPKS
MPVSGTSIQSTIGANGVILDNQPVVKKRRGRRKNVEGVDILFFNRNKPPNHVTLGLTTSQ
ISTGINPALSYPQPQGIPDTESPVPVINLKDGTRLAGDDAPKRKDLEKWLKDHPGYVEDL
GAFIPRVQLHEGRPKQKRHRCRNPNKLDVNTLTGEERVQLINRRNARKVGGAFAPPLKDL
CRFLKENSEYGVAPEWGDVVKQSGFLPESMYERILTGPVVREEVSRRGRRPKSGIVKATA
AAAAAATATSVSGNPLLANGLLPGVDLTTLQALQQNLQNLQSLQVTAGLMGMPAGLSSGG
EAKNMAAMFPMLLSGMAGLPNLLGMGGLLTKPADSGAEEKKGNDSKEHEGKKERTESQSS
ENGGENSVSSSPSTSSTAALNTAAAANPLALNPLLLSNILYPGMLLTPGLNLHIPTLSQS
NTFDVQKSKNSDLGSSKTVEVKEEDSRVKDQEDKGGTEPSPLNENSTDDGSEKADASSGS
DSTSSSSEDSDSSNED
NT seq
8691 nt
NT seq
+upstream
nt +downstream
nt
atgacagatccaatgatggacttttttgatgatgccaatctttttggtgagaccttagaa
ggtttatcagatgatgcatttgtacaaccaggacctgtttcactagttgacgaattgaac
ttgggtgcagagtttgaacctttgcatatagactcattgaaccatgttcatggtactcca
acacatcagaagatgactgattttgaacagttaaatcaatttgattcaatgaaatttcat
caagttaatcagtcttttggtagcccagctgaacatgtgttatcaccacactctcagttt
aattgttcacctatccatcccccaaaccaacccaatggtttgtttccagatgtggcagat
ggcagtccaatgtggggtcatcagacagctactaacatttctaatcaaaatggatctcct
tttcaccaacaaggacattcacattctatgcatcaaaataaaagctttgtggcacaccat
gactttgccttatttcaggccaatgaacaacaaacacagtgtacttcactacgctcacaa
caaaacagaaataatcttaccccagggcaaaattctcttaaccattctattaatgtttct
ggtcctcatagagtcagtgttaaccacccaccacaaattactaatgcatctacttcacaa
cagtctctttcgatgcaattttctcaaacgtcaaatccttcagtacacttcctcaagtgt
aacaatcatcaagaaggaaattttaatggaccctctccaaatatgacttcttgttctgtc
agtaattctcagcagttttcttcacattattccttttccaataatcatatttcaccaaac
agtctccttcaatcctctgcagttcttgcacccaatcatgcaaatcagactctatctgat
ttttctggaagtaattccttttcacctcataggggaatcaagcaagaatctactcagcat
atcctaaaccccaatgcatcattgaattcaaataattttcaaatgttgcattcatcacat
cctcagggtaattatagcaattcaaaattatctcctgtgcatatgaacttcccagatcct
gttgactcaggaactcaaatgggccatttcaatgatcatgtagaaactaatggcttttca
tctttagaagacaatttacttcatcaagtggaatctcaaactgagccattcacaggactt
gacccagaggacctccttcaggagggtctgcttccgcaatttgatgagtcaacatttgga
caagataattcaaatcatgctttagatcatgaccttgatcgacactttacttcacatatt
gtagcacggccttctgatatggctcaaactcagttgcaatgtcaggctcggagttggcat
tcatccttttctaatcatcagcatttacatgacagaaatcgcctgtgtttacagcgacag
cctccatcttccaagaagaatgatggttctgggacatatactaagttgcagaatacccag
gtgagggtcatgactgagaagaagcagagaaaaaaggtggaatcggaaagcaagcaagaa
aaggctaatcgtataatatcagaggccatagcaaaagcaaaggagcgtggggaacgcaat
attccacgagtaatgagccctgaaaactttcctagtgcttcagttgaaggcaaagaggaa
aagaaaggtagaaggacaaaatccaagccaaaggacaaggacaacaaaaaaataaaaacc
tgttctaagttaaaagagaagacaaagattggcaaactcattattacattgggtaagaaa
cagaaaagaaaaaatgagtcttcagatgaaatatctgatgcagagcatatgccatcacat
gcattcaaagatcaagactctcaaaaaagaagatcaaatcgacaaataaaaagaaaaaaa
tatgcagaagatgcagaagggaagcaatctgaagaagaggttaaaggctctatgaaaata
aaaaagaattcagctcctttacctggtgaacagcctttacagttatttgtggagaaccca
agtgaagaagatgctgcaattgtagacaaaatactgtcttctagaattgttaaaaaggaa
atatcacctggagtgatgattgatacagaagaattttttgtaaaatacaagaattactcc
tatcttcactgtgaatgggccacagaagagcagcttttgaaagataaaaggatccagcag
aaaattaaacgattcaaattgagacaagcacaaagagcacatttttttgcagatatggaa
gaagaaccctttaacccagactatgttgaagtagacagagtattagaagtgtcattttgt
gaagataaggatactggtgagcctgttatttactacttagtaaaatggtgctcattgcca
tatgaagatagtacatgggaactaaaggaagatgtagatctggcaaaaatagaagagttt
gaacaactacaagctttgagacctgacacaagacatttggaccgccctccctctaatatt
tggaagaaaatagatcaatccagggactacaaaaatggcaatcaactcagggaatatcaa
ctggaaggactcaactggctcttgttcaactggtacaacagacgaaactgcattttagca
gatgaaatgggtcttggcaaaaccattcaatcaattacattcctctacgaaatccttctg
actggtataagaggacctttcctgattattgcaccactttctaccattgcaaactgggag
agagaatttcgtacatggactgatattaatgttgtggtttatcatggaagcctgattagc
agacagatgatacagcaatatgagatgtacttcagggactcacagggacgcatcattcga
ggagcttacagattccaagccatcatcaccacttttgaaatgattctcggaggctgtgga
gagcttaatgcaattgaatggcgatgtgtaattattgatgaagcacataggttaaaaaat
aaaaactgtaaactcttagaaggtttgaaactcatgaatctggaacacaaggtgcttttg
actggcactcctctccaaaatacagttgaagaacttttcagtcttcttcattttcttgaa
cctttaaggtttccttctgaatcaacatttatgcaagaatttggagatctgaaaacagag
gaacaggtgcaaaaacttcaagctatcctgaaaccaatgatgttgagacgattaaaagaa
gatgttgaaaagaaattggcacctaaggaagaaactatcattgaagtagaacttactaat
attcaaaaaaaatactaccgggctattttggagaagaatttttcatttttgtccaaagga
gcaggacaaactaatgtacctaacttggtcaataccatgatggagcttaggaaatgctgt
aatcatccatatcttatcaaaggtgctgaggagaaaatacttggagaatttagagataca
tataatccaactgctactgattttcatcttcaagcaatgatccagtcagctggtaaattg
gtccttattgataaattgcttcccaaaatgaaagcaggaggtcataaagtgctcatattc
tctcagatggtacgttgccttgatattctggaggactatctcatacataaaagatattta
tatgagcgaattgatggaagagtcagagggaatcttcgacaagctgctatagatcgattt
agtaaacctgattcagatcgatttgtttttctcctgtgtacccgagctggtgggttgggc
atcaatttaactgcagctgatacatgtataatttttgattctgattggaaccctcaaaat
gaccttcaggcccaagctcgttgccacagaattggtcagaacaaagcagttaaagtctac
agattagttactcgtaactcatatgagagagagatgtttgaccgagccagtctcaaactg
ggcctagataaagctgtgttacagagcatgagtggaagagaaagtaatgttggtggtatt
caacagctttctaaaaaggaaatagaagacctgcttcgacgaggtgcttatggtgccatt
atggaggaagaagatgaaggctctaaattctgtgaagaggatatagatcagattttacta
cgtcgtacaaaaacaattacaattgaatcagaaggacgtgggtcaacatttgccaaggca
agttttgtggcatctggaaaccggactgatatttccttagatgatcccaacttctggcaa
aaatgggccaaaaaagcagaaatagacatagatgccatcagtggcagaaatagcttggtt
attgacactccaagaattaggaagcaaacaagaccatttagtgccacaaaagatgagttg
gctgaattatctgaagctgaaagtgaaggagatgaaaaacccaaactacggagaccctgt
gatcgttccaatggctatggaagaactgaatgcttcagagtagagaaaaacttgctagtt
tatgggtggggccgatggagagagattctatctcatggacgttttaaaaggcagctaaat
gagcatgatgtagaaataatttgccgagctctcttggcatattgccttgttcactaccga
ggagatgagaaaattaaaggtttcatatgggatctcattactccaactgaagatgggcag
acacgagagttgcaaaatcatctaggcctgtcagctcctgtacccaggggtcgaaaaggg
aagaaagtgaagactcaaacaagttcatttgatatacaaaaagcagaatggcttcgaaaa
tataatcctgagcagctacttcaagatgaaggctacaaaaaacatataaaacaccactgt
aataaggttttgcttcgtgtaagaatgctatattacctaaagcaagaagtcattggaaat
gagtgtcaaaaagtatttgatggagtagatgcaagtgatattgatgtttgggtaccagaa
ccagaccattcagaagttcctgctgagtggtgggactttgacgctgataagtctctcctt
ataggggtttttaaacatggatatgaaaaatataacactatccgagcagacccagcatta
tgcttcttagaaagagtgggaaaacctgatgacaaagccgttgctgctgaacagagagcc
aatgattttatggatggggatgtggaagatccagaatacaagcctgccccagccatcttt
aaagatgatatagaggatgatgtttcctcacctggagatcttgttatagcagatggagat
ggtcaactgatggagggtgataaaatttattggcctactcagtcagctttaaccacacgg
ttgagacgtcttatcactgcatatcaacgtactaataaaaacagacaaatccagcagata
caaccaaccttctcagtgcctgccagtgtaatgcatcctctttatgaagaagccactctt
aatcctaaaatggcagccaagatagaaagacaacagagatggacaagaagagaagaagct
gacttttatcgagttgtatctacatttggagttgtttttgaccctgatagaggccaattt
gattggacaaaatttagagctatggctaggttacataagaaaactgatgaaagtttggag
aaatacttgtatgcattcatgtccatgtgtcggagggtttgtcgtcttccttccaaagaa
gaattggtagatccaaatatttttatccaaccaatcacagaagaacgtgcttctaggact
ttgtatcgcattgaacttctgaggaaagtacgggagcaggcccttcgacatccacagttg
tttgaacgcttgaagctttgtcatccaaatccagacttgccagtctggtgggaatgtggc
cctcatgatagggatttgcttattggcgctgctaaacatggggtgagccgaacagattat
catattcttcgtgatcctgaactctcatttatggcagctcaaaggaactacagtcaaagt
aagatgactcattcaaggacttctaccccacttttacagcaataccaagtagcactttcc
gcttctcctcttacctctttacctaggctcctagatgctaaaggtattattctagaggat
atgaaagttaaaagtgaaacccttaaagaagagcctcagtcttctgaagaagaatctatg
tcttctgtggaaaccaggacactaataaagtccgagcctgtaagtccaaagaatggtgtt
ttatcacaggctactggagaccagaaatctggtggaaaagttgaaacagacagacgcatg
gttgcagccagaacagaacccctaactccaaacccagcttctaagaaacagagagtccac
aaaagaggatcagaatctagttctgattctgactctgattctgagagatcatcctgttct
tccagatcatcatcttcctcgtcttcttcctcttcttgttcccattctcgatcaggctct
agttcttcttcatcctcatcatgttcttcagcatcatcttcatcctcctcatcctcctcc
tcctcctcatcttcttcatcttcatcagaagaaagtgacagtgaagaagaggaagtccaa
aagcgagcagaaagtacccctcacatgaaggcctatgatgaagaaagtgttgcatcactg
agcactacccaggatgagacccaggatagtttccaaataaacaatgggacaccagaatct
gcttacctcttacagggtggttacatgctggcagcttcatattggccaaaggatcgtgtg
atgatcaaccgactggacagtatttgtcaaacagttctcaaagggaagtggccttcagct
agaagaagttatgatgctaacacagtggcttctttttataccacaaaactactggacagc
cctggagcagctacagaatatagcgagtccagtgttcccactcccccaggtgctggtgtc
aaagaagaacatgatcagtcaacacagatgtcaaaggtgaagaagcatgtacgagaaaag
gagtttacagtgaaaatcaaagacgaaggtggtttgaagttgacatttcagaagcaaggg
cttgcccaaaaaagaccatttgatagcgaagatggtgcgctggggcagcagcagtacctc
actcgacttcgggaacttcaaagtgcatcagagacaagcctcgtcaattttccaaaatct
atgcctgtatcaggtacttccattcaatcaacaattggtgccaatggagtgatcttagac
aaccagcctgtagtcaaaaaaaggcggggaaggaggaagaatgtagaaggtgttgacatc
ctcttttttaacagaaataaaccacctaatcatgttactttaggtttaaccacctcacag
atttccacagggataaatccagcattatcctatcctcaacctcaaggaattcctgataca
gaaagtccagttccagttattaatcttaaagatgggacaagacttgcaggagatgatgca
ccgaagagaaaggatttggaaaaatggcttaaggatcatccaggttatgtggaagattta
ggagcttttattcctagagtgcagcttcatgaaggaagacccaaacaaaaaagacatcgt
tgcagaaaccccaataagcttgatgttaatactcttactggagaagaacgtgttcaactg
attaacagaagaaatgccagaaaggttggaggtgcatttgctccccctttgaaagactta
tgtagatttctaaaagaaaattcagaatatggagtagctcctgaatggggagatgttgtt
aagcaatctgggtttcttccagaaagtatgtatgaacgtattctcacgggtcctgtcgtg
agagaggaagtaagcaggcgggggagacgccctaaaagtggaattgtgaaggccacagca
gcagctgctgctgctgcaactgccaccagtgtttcaggcaatcctttgttagccaatgga
ttactcccaggtgtggatctcacaactcttcaggccttacaacaaaatctacagaatttg
cagtcactgcaagtaactgcagggctaatgggaatgcctgctggcctttcttctggagga
gaagctaaaaacatggctgctatgttccccatgctgctgtcaggaatggcaggattacca
aatctgttgggcatgggaggactcctaacaaaacctgcagattctggggcagaagagaaa
aagggaaatgactctaaggagcacgaaggaaaaaaagaaaggacagagagccaaagttca
gagaatggtggagaaaactctgtgtcaagttctccttcaacttcctctactgctgcatta
aatacagctgcagctgccaacccattagctcttaacccactattactatctaatatactt
tatccagggatgcttctcactccaggccttaatcttcatattccaactttgtcccagtcc
aatacttttgatgtacagaaaagcaaaaacagtgacttaggctcatctaagactgtagaa
gtaaaggaagaagattccagagttaaagatcaggaagacaaagggggaactgaacctagt
cctctcaatgaaaacagcacagatgatggttcagagaaagctgatgcttcatctggatct
gatagtacatcatcgtcatccgaggattcagattctagtaatgaagactga
DBGET
integrated database retrieval system
