Sciurus carolinensis (gray squirrel): 124968572
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Entry
124968572 CDS
T08117
Name
(RefSeq) ATP-dependent RNA helicase DDX39A
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncar03041
]
124968572
Enzymes [BR:
ncar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124968572
Spliceosome [BR:
ncar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
124968572
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
124968572
NCBI-ProteinID:
XP_047387119
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Position
17:complement(15838420..15846812)
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AA seq
427 aa
AA seq
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MAEQDVENELLDYEEDEEPQAPPESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCH
TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVR
NRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCM
ALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDIS
TYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcagaacaagatgtggaaaacgagcttttggattatgaggaagatgaagagccccag
gctcctcctgagagcactccagctcctcccaagaaagacgtcaaggggtcctacgtctcc
atccacagctctggctttcgcgattttctgctgaagcctgagctcctgagggccatagtg
gactgtggttttgaacacccgtcagaggtccagcacgagtgtattccccaggccatcctg
ggcatggacgtcctgtgccaggccaagtctggaatgggcaagacggccgtcttcgttctg
gctactctgcagcagatcgagcctgtaaatggacaggtgacggtcctggtcatgtgccat
acgagagagttggccttccaaatcagcaaggagtatgagcgcttctccaaatacatgccc
agtgtcaaggtgtctgtgttctttgggggcctctccatcaagaaagatgaagaagtgttg
aagaagaattgtccccacgtcgtggtggggacaccaggccggatcctggcactcgtgcgg
aacaggagcctcaacctaaaaaatgtgaagcactttgtgttggacgagtgtgacaagatg
ctggagcagctggatatgcggagggacgtgcaggagatcttccgcctgacgccccatgag
aagcagtgtatgatgttcagtgccaccctgagcaaggagatccggccagtctgcaggaag
ttcatgcaggatcccatggaggtgtttgtggacgacgagaccaagctcacgctgcatggg
ctgcagcagtactatgtcaagctcaaggacagcgagaagaaccgaaagctctttgatctc
ctggatgtgctggagtttaaccaggtggtgatcttcgtcaagtcagtgcagcgctgcatg
gccctggcccagctccttgtggagcagaacttcccagccatcgccattcaccggggcatg
gcccaggaggagcgtctgtcacgctaccagcagttcaaggacttccagcggcggatcttg
gtggccaccaatctctttggccgagggatggatattgagcgcgtcaacattgtcttcaat
tacgacatgcccgaggactccgacacctacctccaccgggtggcccgtgcaggtcgcttt
ggcaccaaaggcctggccatcacttttgtgtctgatgaaaatgatgccaaaatactcaat
gatgtccaggaccggtttgaagtgaatgtggctgagcttccagaagaaatcgatatctcc
acatacattgagcagagccggtaa
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