Sciurus carolinensis (gray squirrel): 124968606
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Entry
124968606 CDS
T08117
Name
(RefSeq) polypyrimidine tract-binding protein 1 isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124968606
03041 Spliceosome [BR:
ncar03041
]
124968606
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
124968606
Spliceosome [BR:
ncar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
124968606
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
124968606
NCBI-ProteinID:
XP_047387170
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All DBs
Position
17:87816..98307
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AA seq
557 aa
AA seq
DB search
MDGIVPDIAVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRV
IHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPV
LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQ
SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS
LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGAP
GIISASPYAGAGFPPTFAIPQATGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGA
GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHL
NGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSA
TLHLSNIPPSITEEDLKALFSSSGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNH
DLGENHHLRVSFSKSTI
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggacggcatcgtcccagacatagcagttggcacgaagcggggatctgacgagctcttc
tctacgtgtgtcactaacggaccctttatcatgagcagcaactctgcctctgcagccaac
ggaaatgacagcaagaagttcaaaggtgacagcaggagtgcgggtgtcccctcccgtgtg
atccacatccgcaagctgcccagtgacgtcactgagggcgaggtcatctccctggggctg
ccctttgggaaggtcaccaacctcctgatgctgaagggcaagaaccaggccttcatcgag
atgaacacagaggaggcggccaacaccatggtcaactactacacctcggtgacgccggtg
ctgcggggccagcccatctacatccagttctccaaccacaaggagctcaagaccgacagc
tccccaaaccaggcgcgagcccaggcggcgctgcaggccgtgaactcggtccagtcaggg
aacctggccttggccgcctctgccgcagccgtggacgcagggatggcgatggctgggcag
agccccgtgctcagaatcatcgtggagaacctgttctaccccgtgacgctggacgtgctg
caccagatcttctccaagttcggcacggttctgaagatcatcaccttcaccaagaacaac
cagttccaggctctgctgcagtacgccgaccccgtgagcgcccagcacgccaagctgtcg
ctggacgggcagaacatctacaacgcctgctgcacgctgcgcatcgatttctcaaagctg
accagcctgaacgtcaagtacaacaacgacaagagccgcgactacacgcgcccagacctg
ccttccggggacagccagccctcgctggaccagaccatggccgcagccttcggtgcacct
ggtataatctcagcctctccgtatgcaggagctgggttccctcccacctttgccattcct
caagccacaggtctctccgttcctaacgtgcatggagccctggccccgttggccatccca
tcagccgcagctgcagcagccgccgcaggccgcatcgccatcccaggcctggcaggggcc
gggaactccgtccttctggtcagcaacctcaaccccgagagagtcacaccccaaagcctc
tttattcttttcggcgtctacggggacgtgcagcgggtgaagatcttgttcaacaagaag
gagaatgcgctggtgcagatggcagacggcagccaggcccagctggccatgagccacctg
aacgggcacaagctgcacgggaagcccatccgcatcacactgtccaagcaccagaacgtc
cagctgccgcgtgagggccaggaggaccagggtctcaccaaggactacggcaactccccg
ctgcaccgcttcaagaagccgggctccaagaacttccagaacatcttcccgccctccgcc
accctgcacctctccaacatcccgccttccatcacggaggaagacctcaaggccctgttc
tccagcagcgggggcgtggtcaagggcttcaagttcttccagaaggaccgcaagatggcg
ctgatccagatgggctccgtggaggaggcggtgcaggcgctcatcgacctgcacaaccac
gacctgggcgagaaccaccacctgcgggtctccttctccaagtccaccatctag
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