Sciurus carolinensis (gray squirrel): 124968731
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Entry
124968731 CDS
T08117
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124968731
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124968731
03041 Spliceosome [BR:
ncar03041
]
124968731
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
124968731
Spliceosome [BR:
ncar03041
]
Complex B
Other components
Prp19-related factors
124968731
Complex C
124968731
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
ARM_TT21
TPR_15
ARM_TT21_C
TPR_MalT
TPR_1
TPR_21
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
124968731
NCBI-ProteinID:
XP_047387420
LinkDB
All DBs
Position
17:complement(4837445..4846285)
Genome browser
AA seq
855 aa
AA seq
DB search
MVVMARVSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVNFKQVDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKEFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPPRAQSKILFVRSDASREELAELAQQANPEEIQLGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgcgtctcgcggcccgagcggccggaccttgtctttgaggaagag
gaccttccctatgaggaggaaatcatgcgtaaccagttctcagtcaaatgctggctccgc
tatatagagttcaaacagggggccccaaagcccagactcaaccaactgtatgagcgggca
ctcaagctgctgccctgcagctacaaactctggtaccgctacctaaaggcacgtcgggca
caggtgaagcatcgctgtgtgaccgaccctgcttatgaagatgtcaacaactgccacgag
agagcctttgtgttcatgcacaagatgccccgtctgtggctagattattgccagttccta
atggaccagggacgtgtcacacacacccgccgcacctttgaccgtgccctccgggctctg
cctatcacccagcactctcgtatttggcccctgtacctgcgcttcctgcgttcccaccca
ctgcctgagacagctgtgcgaggataccgtcgcttcctcaagctgagtccagagagtgct
gaggagtacatcgagtacctcaagtcgagtgaccggctggatgaggctgcacagcgcctg
gccactgtggtgaatgacgagcgctttgtgtccaaggctggcaagtccaattaccagctg
tggcacgagctgtgcgacctcatctcgcagaatccagacaaggtgcagtccctcaacgtg
gacgccatcatccgcggcggcctcacccgtttcaccgaccagctgggcaagctgtggtgc
tcactggctgactactacatccgcagtggccacttcgagaaggcccgagatgtgtacgag
gaggccatccgcactgtgatgactgtgcgggacttcacacaagtgttcgacagctacgcc
cagtttgaggaaagcatgattgctgccaagatggagactgcctcagagctagggcgcgag
gaagaggatgacgtggacctggagctgcgcctggctcgcttcgagcagctcatcagccgg
cggcccctacttctcaacagcgtcctgctgcgccagaacccacaccacgtccatgagtgg
cacaagcgcgtggccctgcaccagggccgccctcgggagatcatcaacacctacacggaa
gccgtgcagacagtggaccccttcaaggccacaggcaagccccacacgctgtgggttgca
ttcgccaagttctatgaagacaacgggcagctggacgacgcccgcgtcatcctggagaag
gccaccaaggtgaacttcaagcaggtggacgacctggcgagcgtgtggtgccagtgcggg
gagctggagctccggcacgagaactacgacgaggccctgcggctgctgcggaaggcgact
gcactgcccgcacgcagggctgagtactttgacggctcggagcccgtgcagaaccgcgtg
tacaagtccctgaaggtgtggtcgatgctggccgacctggaggagagcctgggcaccttc
cagtccaccaaggccgtgtacgaccgcatcctggacctgcgcatcgccacaccgcagatt
gtcatcaactatgccatgttcctggaggagcacaagtactttgaggagagcttcaaggcc
tacgagcgtggcatctccctattcaagtggccaaatgtgtccgacatctggagcacctac
ttgaccaaattcatcgcccgctacggaggccgcaagctggagcgggcacgggacctcttt
gagcaggcgctggatggctgcccgcccaaatatgccaagaccctgtacctactgtatgcg
cagctggaagaggagtggggcctggcgcggcatgccatggctgtgtacgaccgtgccacc
agggccgtagagcctgcccagcagtatgacatgttcaacatctacatcaagcgggccgct
gagatctacggtgtcacccacacccgaggcatctaccagaaggccattgaggtgctgtcc
gacgagcatgcccgggagatgtgcctgcggtttgcagacatggagtgcaagctcggggag
atcgaccgcgccagggccatctacagcttctgctcccaaatatgtgacccccggaccact
ggggcgttctggcaaacgtggaaggagtttgaagttcggcacggcaacgaggacaccatc
agggagatgctgcggatccgtcgcagtgtgcaggccacgtacaacacgcaggtcaacttc
atggcctcacagatgcttaaggtgtcgggcagtgccacaggcaccgtgtccgatctggct
ccagggcagagcggcatggatgacatgaagctgctggagcagcgggcagagcagctggca
gccgaggccgagcgggaccagcccccacgggcccagagcaagatcctctttgtgaggagt
gacgcgtcccgggaggagctggcagagctggctcagcaggccaaccccgaggagatccag
ctgggtgaagatgaggacgaggacgagatggacttggagcccaacgaggttcggctggag
cagcagagcgttccagctgctgtgtttgggagcctgaaggaagactga
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