KEGG   Sciurus carolinensis (gray squirrel): 124968991
Entry
124968991         CDS       T08117                                 
Name
(RefSeq) LOW QUALITY PROTEIN: RNA polymerase II elongation factor ELL-like
  KO
K15183  RNA polymerase II elongation factor ELL
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    124968991
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:ncar01009]
    124968991
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ncar03021]
    124968991
Protein phosphatases and associated proteins [BR:ncar01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     124968991
Transcription machinery [BR:ncar03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     124968991
    Little elongation complex (LEC)
     124968991
SSDB
Motif
Pfam: ELL Occludin_ELL DUF3450 DUF6185 RNA12 Uds1 GAS EzrA
Other DBs
NCBI-GeneID: 124968991
NCBI-ProteinID: XP_047387783
LinkDB
Position
17:complement(22069808..22136524)
AA seq 617 aa
MAALKEARSYGLSCGRVSDGSKVSVFHVKLTDSALKAFESYRASQDSLSLRPSIRFQGSQ
GHISIPQPDCPKEVRKFSFYLSNIGRDSPQGSFDCIQQYVSSHGDVHLDCLGSIQDKVTV
CATDDSYQKARESMAQAEEETRSRGAIVIKPGGRYLGKKVHFRKPAPGATEAVPSRKRAT
PINLASAIRKSGVSGTSGVSQRPFRDRVLHLLALRPYRKAELLLRLQKDGLAQADKDSLD
GLLQQVANVNAKDGTCTLRDCMYKDVQKDWPGYSEGDQQLLKRMLVRKLCQPQSAGSLPA
EPGAASPPGEHGTSASPPQKRPQPPDFIDPLANKKPRISHFAQRERAQPALNGKLGVPNG
REALLPTPGPPTSTDTLSSSAHLPLRLEPPRAHDPLTDVSNDLGHSGQDSKRGEATAPSP
ATHLGIPLLTDYTQPDRPHDSAARSKPKKKSKKHKGKERAAEDRHRAQSPGHAPATHTAP
PDAPGLNGTCSSASVPTSTSETPDYLLKYAAISSSEQRQSYKNDFNAEYSEYRDLHARIE
QITRRFTQLDAQLRQLSQGSEEYETTRGQILQEYRKIKKTNTNYSQEKHRCEYLHSKLAH
IKRLIAEYDQRQLQAWP
NT seq 1854 nt   +upstreamnt  +downstreamnt
atggcggcgctgaaggaggctcggagctacgggctgtcgtgcgggcgggtgagcgacggc
agcaaggtgtctgtgttccacgtgaagctcaccgacagtgccctgaaggccttcgagagc
taccgcgccagccaggattctctttccctgagaccatcgatccgatttcaaggaagccaa
gggcacatctccatccctcagcccgactgccccaaggaggtgcgaaagttctccttctac
ctctccaacatcggccgcgacagcccccagggcagcttcgactgcatccagcagtatgtc
tccagccatggggatgtccacctggactgcctgggcagcatccaggacaaggtcacagtg
tgcgccactgatgactcctaccagaaagcacgggagagcatggcacaggcggaggaggag
acccggagccgcggcgccatcgtcatcaagcccggaggacgctacctgggcaagaaggtt
cactttcggaagccagccccgggggcgacagaggcagtgccttcccggaagcgggccact
cccatcaacctggcaagcgccatcaggaagagcggtgtaagcgggaccagcggggtgtcc
cagaggcctttccgtgaccgggtgctgcaccttctggccctgaggccctaccggaaggct
gagctgctgctgaggctgcagaaggacggcctggcacaggcggacaaggactcgctggat
ggcctgctccagcaggtggccaatgtgaatgccaaggacggcacgtgcacgctgagggac
tgcatgtacaaggacgtgcagaaggactggcccggctactcggagggggaccagcagctg
ctgaagcgaatgcttgtccggaagctgtgccaaccgcagagcgcaggcagcctgcccgca
gagccgggggcagccagccccccgggcgagcatgggacctctgcctcgccgcctcagaaa
cggccacagccacctgatttcatcgaccccctggccaacaagaaacccaggatatcacac
tttgcccagagagagagagcccagcctgccctcaatgggaaactgggtgtgcccaatggc
cgtgaggccctgctgcccaccccggggccaccgaccagcacagacaccctcagctccagt
gcccacctccctctgcgactggagcccccacgggcccacgaccccctgaccgatgttagc
aatgacctgggccacagtggccaggacagtaagcgcggggaggcaactgcccccagccct
gccactcacctcggtatccccctgctgacggactacacccagcccgacaggccccacgac
agcgctgcccgcagcaagcccaagaagaagtccaagaagcacaaaggcaaggagagggcg
gccgaggacaggcaccgggcccagtcgccaggtcacgctcctgctacccacacagccccg
cctgacgccccaggtctcaacgggacctgcagcagtgccagcgtgcccacctccacgtca
gagacgccagactacttgctaaaatatgcagccatctcctcttccgagcagcgccagagc
tacaagaatgacttcaacgccgagtacagcgagtaccgcgacctgcacgcccgcatcgag
cagatcacgcggcggttcacgcagctcgacgcccagctccggcagctgtcccagggctcc
gaggagtatgagaccactcgtgggcagattctgcaggaataccgaaaaatcaagaagacc
aacaccaactacagccaggagaagcaccgctgcgagtacctgcacagcaagctggcccac
atcaagcggctcatcgccgagtacgaccagcggcagctgcaggcctggccctag

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