Sciurus carolinensis (gray squirrel): 124969158
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Entry
124969158 CDS
T08117
Name
(RefSeq) transportin-2 isoform X1
KO
K18727
transportin-2
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124969158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124969158
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
124969158
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
TPR_IMB1
HEAT_GCN1
Arm
HEAT_2
TOR1L1_N
IBN_N
TPR_IPO5
Cnd1
Vac14_Fab1_bd
HEAT_EF3_N
TPR_DNAAF5
PDS5
HEAT_MROH2B_C
Adaptin_N
MMS19_C
HEAT_GCN1_C
HEAT_ECM29
Ltn1_1st
HEAT_MROH2B_1st
INTS7_N
HEAT_GCN1_C_2
SCD
UNC45-central
Dopey_N
TPR_TTI1_C
VPS15-like_hel
TPR_IPO11
RTP1_C1
DUF2573
Yqai
Motif
Other DBs
NCBI-GeneID:
124969158
NCBI-ProteinID:
XP_047387945
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Position
17:15284152..15301148
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AA seq
887 aa
AA seq
DB search
MDWQPDEQGLQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDE
PTRSLSGLILKNNVKAHYQSFPPPVADFIKQECLNNIGDASSLIRATIGILITTIASKGE
LQMWPELLPQLCNLLNSEDYNTCEGAFGALQKICEDSSELLDSDALNRPLNIMIPKFLQF
FKHCSPKIRSHAIACVNQFIMDRAQALMDNIDTFIEHLFALAVDDDPEVRKNVCRALVML
LEVRIDRLIPHMHSIIQYMLQRTQDHDENVALEACEFWLTLAEQPICKEVLASHLVQLIP
ILVNGMKYSEIDIILLKGDVEEDEAVPDSEQDIKPRFHKSRTVTLPHEAERPDGSEDAED
DDDDDALSDWNLRKCSAAALDVLANVFREELLPHLLPLLKGLLFHPEWVVKESGILVLGA
IAEGCMQGMVPYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWVVSQPPDMHLKPLMT
ELLKRILDGNKRVQEAACSAFATLEEEACTELVPYLSYILDTLVFAFGKYQHKNLLILYD
AIGTLADSVGHHLNQPEYIQKLMPPLIQKWNELKDEDKDLFPLLECLSSVATALQSGFLP
YCEPVYQRCVTLVQKTLAQAMMYTQHPEQYEAPDKDFMIVALDLLSGLAEGLGGHVEQLV
ARSNIMTLLFQCMQDSMPEVRQSSFALLGDLTKACFIHVKPCIAEFMPILGTNLNPEFIS
VCNNATWAIGEICMQMGAEMQPYVQMVLNNLVEIINRPNTPKTLLENTAITIGRLGYVCP
QEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICMMIGVNPGGVVQDFIFFCDAVASWV
SPKDDLRDMFYKILHGFKDQVGEENWQQFSEQFPPLLKERLAAFYGV
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atggactggcagccagacgagcagggcctgcagcaggtcctgcagctgctcaaagactca
cagtcgcctaacacggccactcagcgcatcgtacaggataaactcaaacaactcaaccag
tttcctgacttcaacaactaccttatctttgtcctgaccagactcaaatcagaagatgag
cccacccgttctctcagtggcctcatccttaagaacaacgtgaaggcacattaccagagc
ttcccaccccctgtggctgatttcatcaaacaggagtgtctcaacaacattggtgacgcc
tcctcgctcatccgagccaccatcggtatcctcatcaccaccatcgcttccaagggtgag
ctgcagatgtggcctgagctgttgccccagctgtgcaacctgctcaactcagaggattac
aacacttgtgagggagcgtttggagccctgcagaagatctgtgaagactcctccgagctc
ctagatagtgatgctctcaacaggcccctgaacatcatgatccctaagtttctgcaattc
tttaagcactgcagtcccaagatccggtcccatgccattgcctgtgtgaaccagttcatc
atggaccgggcgcaggcgctgatggacaacattgacaccttcattgagcacctgtttgcc
ctggctgtggatgatgaccctgaggtgcggaagaatgtgtgccgtgccctggtgatgctt
ctggaagtgcggattgataggctcatcccccacatgcacagcattatccagtacatgctg
cagaggacccaggaccacgacgagaacgtagccctcgaggcttgtgagttctggctgacg
ctggccgagcagcccatctgcaaggaagtccttgcctcccatctggtccagttgatcccc
atcctggtcaatggaatgaagtactcagaaattgacatcatcctgctcaagggggatgtg
gaggaggatgaggcagtccccgacagtgagcaagacatcaagcctcgcttccacaagtcc
cgaacggtgacgctgccccatgaggctgagcggcctgacggttctgaggatgcagaggat
gatgacgatgatgatgctttgtccgactggaatctgaggaagtgctcagcggctgcactg
gatgtccttgccaatgtcttccgggaggagctgctgcctcacctactccccctgctcaag
ggcctcctgttccaccctgagtgggtggtcaaagagtcaggcatcctggtgctgggcgcc
attgccgagggctgcatgcagggcatggtgccctacctgcccgagctgatcccgcacctc
atccagtgcctgtcagacaagaaggccctggtccgctccatcgcctgctggacactgagc
cgatatgcccactgggtggtcagccagcccccagacatgcaccttaagcctctgatgacg
gagttgctcaagcgcatcctggatggcaacaagagggtgcaggaggcggcctgcagtgcc
ttcgctaccctggaggaggaggcctgcacggagctggtgccctacctcagctacatcctg
gacacccttgtctttgcctttggcaagtaccagcacaagaacctgctcattctctacgat
gctatcggcactctggctgactctgtgggccaccatctcaaccagccggaatatatccag
aaactgatgcccccgctgatccagaagtggaacgagctcaaggatgaagacaaggacctc
ttccccctattggagtgcctgtcatcggtggccactgctctacagagcggcttcctgccc
tactgtgagcctgtctaccaacgttgtgtcaccctggtgcagaagacactggcccaggcc
atgatgtacacccagcaccctgaacagtacgaggccccagacaaggacttcatgattgtg
gcactggacctgctcagtggactggccgagggtctgggtggccacgtggagcagctggtg
gcccgaagcaacatcatgacattgctcttccaatgtatgcaggactcgatgcctgaggtc
cggcagagctcctttgccctcctgggagacctcaccaaagcctgcttcatccatgtcaag
ccctgtatcgctgagttcatgcccatcctgggcaccaacctgaaccctgaattcatctct
gtctgcaacaatgccacctgggccatcggggagatctgcatgcagatgggggcagagatg
cagccttatgtgcagatggtcctcaacaacctggtggagataattaacaggcccaacaca
cccaagacactgctggaaaacacagccatcaccattggccgcctgggctacgtgtgccca
caggaggtggcacccatgctgcagcagttcatccggccttggtgcacatccctcaggaac
atcagggacaatgaggagaaggactctgccttccggggcatctgcatgatgatcggtgtc
aaccccgggggcgtcgtgcaggactttattttcttctgcgatgctgtagcctcctgggtg
agcccgaaggatgaccttagggacatgttttataagatcctccatggcttcaaagaccaa
gttggggaggaaaactggcagcagttctcggagcagttcccgccactgctcaaggagagg
ctggcggccttctatggcgtctag
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