Sciurus carolinensis (gray squirrel): 124969376
Help
Entry
124969376 CDS
T08117
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
124969376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124969376
04121 Ubiquitin system [BR:
ncar04121
]
124969376
Enzymes [BR:
ncar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124969376
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124969376
Ubiquitin system [BR:
ncar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
124969376
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-B_box
SGL
ANCHR-like_BBOX
zf-C3HC4
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
124969376
NCBI-ProteinID:
XP_047388260
LinkDB
All DBs
Position
17:complement(35664836..35734689)
Genome browser
AA seq
869 aa
AA seq
DB search
MASFPETDFQICLLCKEMCGSPAPLSSNSSASSSSSQTSTSSGGGGGGPGAAARRLHVLP
CLHAFCRPCLEAHRMPAAGGGAPGEPLKLRCPVCDQKVVLAEAAGMDALPSSAFLLSNLL
DAVVATAEEPPPKNGRAGAPAGAGGHSNHRHHAHHAHPRASASAPPLPQAPPPPAPSRSA
SGGPTASPSALLLRRPHGCSSCDEGNAASSRCLDCQEHLCDNCVRAHQRVRLTKDHYIER
GPPGPAAAAAAAQQLGLGSPFPGAPFSILSVFPERLGFCQHHDDEVLHLYCDTCSVPICR
ECTMGRHGGHSFIYLQEALQDSRALTIQLLADAQQGRQAIQLSIEQAQTVAEQVEMKAKV
VQSEVKAVTARHKKALEERECELLWKVEKIRQVKAKSLYLQVEKLRQNLNKLESTISAVQ
QVLEEGRALDILLARDRMLAQVQELKTVRSLLQPQEDDRIMFTPPDQALYLAIKSFGFVS
SGAFAPLTKATGDGLKRALQGKVASFTVIGYDHDGEPRLSGGDLMSAVVLGPDGNLFGAE
VSDQQNGTYVVSYRPQLEGEHLVSVTMCNQHIENSPFKVVVKSGRSYVGIGLPGLSFGSE
GDSDGKLCRPWGVSVDKEGYIIVADRSNNRIQVFKPCGSFHHKFGTLGSRPGQFDRPAGV
ACDASRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILVSDT
RNHRIQLFGPDGVFLNKYGFEGALWKHFDSPRGVAFNHEGHLVVTDFNNHRLLVIHPDCQ
SARFLGSEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFEANGSFLCKFGAQGSGFG
QMDRPSGIAVTPDGMIVVVDFGNNRILIF
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgttccccgagaccgacttccagatctgcctgctttgcaaggagatgtgcggc
tccccagcgccgctctcctccaactcgtccgcgtcgtcttcgtcctcgcagacgtccacg
tcgtctgggggcggcggagggggccccggggcggcggcacgccgcctacacgtcctaccc
tgcctacacgccttctgccgcccctgcctcgaggcgcatcggatgccggcggcgggcggc
ggcgctccaggagaaccgctcaagctgcgctgccccgtgtgcgaccagaaagtagtgtta
gccgaggcggcgggcatggacgcgctgccttcgtcagccttcctgctcagcaacctgctt
gacgccgtggtggccactgccgaggagccgccgcccaagaacgggcgcgccggcgcccca
gcgggcgcgggcggacacagcaatcaccggcaccacgcgcaccacgcgcacccgcgcgcg
tccgcctcggcgccgccgctcccacaggcgccgccgccgcccgcgccttctcgctcagcg
tcgggtggccccactgcctccccgtcggcactgctgctgcgccggccgcatgggtgcagc
tcgtgcgatgaaggcaacgcggcctcttctcgctgcctcgactgccaggagcacctgtgc
gacaactgcgtccgcgcgcaccagcgcgtgcgtctcaccaaggaccactatatcgagcgc
ggcccgcctggtcccgcagccgccgccgcggcggcgcagcaactcgggctcggctcccct
tttcccggtgcgcccttctccatactgtcggtgttcccggagcgcctcggcttctgccag
caccacgacgacgaggtgctgcacctgtactgcgacacttgctctgtgcccatctgtcgg
gagtgcacaatgggccgacatgggggccacagcttcatctacctccaggaggcgctgcag
gactcgagggcactcaccatccagctgctggcagatgcccagcagggacgccaggcaatc
cagctgagcatcgagcaggcccagacggtggcagaacaggtggagatgaaggcgaaggtg
gtccagtcggaggtcaaggctgtgactgcaaggcataagaaggccctggaggagcgggag
tgcgagctgctgtggaaggtagagaagatccgccaggtgaaagccaagtctctatatctg
caggttgagaaactgcggcaaaacctcaacaagcttgagagcaccatcagtgccgtccag
caggtcctggaggagggtagggcactggacatcctgctggcccgagaccggatgctggcc
caagtgcaggagctgaagaccgtacggagcctcctgcagcctcaggaagatgatcggatc
atgttcacaccccctgaccaggcattatacctcgccatcaagtcctttggctttgttagc
agtggggcctttgcaccgctcactaaggccacaggtgatggcctcaagcgggccctccag
ggtaaggttgcctccttcactgtcattggctatgaccacgatggtgagccacgcctttca
ggaggtgacctcatgtcagctgtggtccttggccctgatggcaacctgtttggtgcagag
gtgagtgatcagcagaatgggacttacgtggtgagctaccggccccagctagagggtgag
catctggtgtcggtgaccatgtgcaaccagcatattgagaacagccccttcaaggtggtg
gttaaatcaggccgcagctacgtgggcattgggctcccaggcctgagctttggcagtgag
ggtgacagcgacggcaagctctgtcgcccttggggtgtcagcgtggacaaggagggctac
atcattgttgctgaccgcagtaataaccgcatccaggtattcaagccctgtggctctttc
catcacaaatttggcaccctgggctcccggccggggcagttcgaccgaccagctggggtg
gcctgcgatgcttcacgcagaatcgtggtggctgataaggacaatcatcgcatccagatc
tttaccttcgagggccagttcctcctcaagtttggtgagaaaggaaccaaaaatggacag
ttcaactacccttgggatgtggcagtgaattctgagggcaagatcctagtctcagacacc
cggaaccaccggatccagctgtttgggcctgatggggtcttcctgaataaatacggcttc
gagggggctctctggaagcactttgattccccacggggtgtggccttcaaccatgagggc
cacttggtggtcaccgacttcaacaaccacaggctcctggtcattcaccccgactgccag
tcagcacgcttcctgggctcagagggcaccggaaacgggcagttcctgcgcccccaaggt
gtggctgtggaccaggaagggcgcatcattgtggcggattccaggaaccaccgggtacag
atgttcgaggccaatggcagcttcctgtgcaagtttggcgctcaaggcagtggctttggg
cagatggaccgcccttccggcatcgcagtcacccctgatggaatgatcgtggtggtggac
tttggcaacaatcgaatcctcatcttctaa
DBGET
integrated database retrieval system
