Sciurus carolinensis (gray squirrel): 124969407
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Entry
124969407 CDS
T08117
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03082
ATP-dependent chromatin remodeling
ncar04714
Thermogenesis
ncar05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124969407
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
124969407
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
124969407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncar03021
]
124969407
03036 Chromosome and associated proteins [BR:
ncar03036
]
124969407
Transcription machinery [BR:
ncar03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
124969407
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
124969407
PBAF complex
124969407
GBAF(ncBAF) complex
124969407
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
DUF919
BRCT_2
SpeFL
Motif
Other DBs
NCBI-GeneID:
124969407
NCBI-ProteinID:
XP_047388296
LinkDB
All DBs
Position
17:23479058..23643680
Genome browser
AA seq
1102 aa
AA seq
DB search
MAAAAGSGPGAATGAGGAGGAAAAAGLAVYRRKDGGPAGKFWESPETVSQLDSVRVWLGK
HYKKYVHADAPTNKTLSGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGTLCHI
LGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNNCLTRPNIYLIPDIDLKLA
NKLKDIIKRHQGTFTEEKSKASHHIYPYPSSQEDEEWLRPVMRKDKQVLVHWGFYPDSYD
TWIHSNDVDAEIEDPPIPEKPWKVHVKWILDTDVFNEWMNEEDYEVDENRKPVSFRQRIS
TKNEEPVRSPERRDRKASANARKRKHSPSPPPPTPTESRKKSGKKGQANLYGKRRSQKEE
DEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEETITTGGK
EDEDPSKGDQSRSVDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNGKNKS
KTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQVDP
ESRPMAMGPPPTPHFNVLADTPSGLVPLHLRSPQVPAAQQMLNFPEKNKEKPIDLQNFGL
RTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHF
LRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEE
FSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPEEPEKLEGAEEEKM
ETDPDVQQPEKTENKVENETDEGDKAQDGENEKNSEKEQDSEVSEDIKSEEKETEENKEL
TDTCKERESDTGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLVE
TQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQQ
QHSQNPQQAHQHSGGPGLAPLGAAGHPGMMPHQQPPPYPLMHHQMPPPHPPQPGQIPGPG
SMMPGQPMPGRMIPTVAANIHPAGSGPAPPGMPPIPGNILGPRVPLTAPNGMYPPPPQQQ
PPPPADGIPPPPAPGPPASATP
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggcagcgggcagcgggccgggggcggcgacgggcgcagggggcgctgggggc
gctgcggcggctgcgggcctagcggtctatcggcggaaggacgggggccctgccggcaag
ttctgggagagcccggagacggtgtctcagctggactcggtgcgcgtctggctgggcaag
cactacaagaagtatgttcatgcagatgctcctaccaataaaactctgtctggattggtg
gtacaacttcttcagttccaggaagatgcctttgggaagcatgtcactaatccggctttc
accaaactccctgcaaaatgtttcatggatttcaaagctggaggcaccttgtgtcatatt
cttggggctgcttacaagtataaaaatgaacagggatggcggagatttgatctgcagaat
ccatcccgaatggatcggaatgttgaaatgtttatgaacatcgagaaaacattggtgcag
aacaattgtctgaccagacccaacatctacctcattccagacattgatctgaagttggct
aacaaattgaaagatatcatcaagcgacatcagggaacatttactgaggagaagtcaaaa
gcttcccaccacatttatccatatccttcctcacaagaggatgaagaatggctgagacca
gtgatgagaaaagacaagcaggttttagtgcactggggcttttacccagacagctatgat
acttggatacatagtaatgatgttgatgcagaaattgaagatccaccaattccagaaaag
ccatggaaggttcatgtgaaatggattttggatactgacgttttcaatgaatggatgaat
gaggaggattatgaagtagatgagaacaggaagccagtgagttttcgtcagcgaatttca
acaaagaatgaagagccagtcagaagtccagagagaagagatagaaaagcatcagctaat
gctcggaagaggaaacattcaccttcacctccccctcctacacctacagaatcgcggaag
aaaagtgggaagaaaggccaagctaatctttatgggaagcgcagaagtcagaaagaggaa
gatgagcaagaagatcttaccaaggacatggaagacccaacacctgtacccaatatagag
gaggtggtactccccaaaaatgtaaacccaaagaaagatagtgaaaatacacccgttaaa
ggaggaactgtagcagatctagatgagcaagatgaagaaacaataacaacaggaggaaag
gaagatgaagatcctagcaaaggtgatcagagtcggtcagttgatcctggtgaagataat
gtgacagagcagactaatcacattattattcccagctatgcatcatggtttgattataac
tgtattcatgtgattgaacgtcgtgctcttcctgaatttttcaatggaaaaaacaaatcc
aagactccagaaatatatttggcatatcgaaattttatgattgacacataccgtctgaac
ccccaagagtatttaaccagcactgcttgtcggagaaacttgactggagatgtgtgtgct
gtgatgagggttcatgcctttttagagcagtggggcctcgttaattatcaagttgatcca
gaaagtcgacccatggcaatgggacctcctcctactcctcattttaatgtattagctgat
actccctctgggcttgtgcctcttcatcttcgatcacctcaggtacctgctgctcagcag
atgttaaattttcctgagaagaacaaggaaaaaccaattgatttgcagaactttggtctc
cgtactgacatctactccaagaaaacattagcaaagagtaaaggtgctagtgctggaaga
gagtggacagaacaggagacccttctacttctggaggccctggagatgtataaggatgat
tggaacaaagtgtcagaacatgtcggaagtcgtactcaggatgaatgcatcctccacttt
ttaaggcttcccattgaggacccatacctcgaaaactcagatgcttcccttggacccttg
gcctaccagcctgtccctttcagtcagtcgggaaatccagtcatgagtactgttgctttt
ttggcatctgtggtggaccctcgtgtggcatctgctgcagcaaaagcagctttagaggag
ttttctcgggtccgagaggaggtaccactggagttggttgaagcccatgtcaagaaagta
caagaggctgcccgagcctctgggaaagtggatcctacctatggcttggagagcagctgt
attgcaggcacagggcctgaagagccagagaaacttgaaggagctgaagaggaaaaaatg
gaaacagaccctgacgttcaacagcctgaaaagacagaaaacaaagtggaaaatgaaaca
gatgaaggtgataaggcacaagatggagaaaatgaaaaaaatagtgagaaggaacaggac
agtgaagttagtgaggatatcaagtcagaagaaaaggagactgaagagaacaaggaactc
actgatacatgtaaagaaagagaaagtgatactgggaagaagaaagtggaacatgaaatt
tctgaaggaaatgttgccacagcagcagcagctgctcttgcctcagctgctaccaaagcc
aagcacttggctgctgtggaagagagaaagatcaagtccctcgtagctctcctggttgag
acacaaatgaagaaactagagattaaacttcgacattttgaggagctggaaactatcatg
gacagagagaaagaggctttagaacaacagaggcaacagttacttactgaacgccagaac
ttccacatggaacagctaaaatatgctgaattacgagcccggcagcaaatggaacagcag
cagcatagccagaaccctcaacaggcacaccagcactcaggaggacctggcctggcccct
cttggagcagcaggacaccctggcatgatgcctcatcagcagcctcctccctaccctctg
atgcaccaccagatgccaccacctcatccaccccagccaggtcagataccaggcccaggt
tccatgatgcctgggcagcccatgccaggccgcatgattcccaccgtcgcagccaacatc
caccctgctgggagtggtcctgcccctcctggtatgcctccaataccaggaaacatcttg
ggaccccgggtccccctcacagcaccgaacggcatgtatccccctccgccacagcagcag
ccaccaccacctgcagatgggattcctccacctcctgctccaggcccaccagcctcggcc
actccttag
DBGET
integrated database retrieval system
