Sciurus carolinensis (gray squirrel): 124969609
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Entry
124969609 CDS
T08117
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03013
Nucleocytoplasmic transport
ncar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124969609
03015 mRNA surveillance pathway
124969609
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124969609
Enzymes [BR:
ncar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
124969609
5.6.2.5 RNA 5'-3' helicase
124969609
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124969609
mRNA cycle factors
Common to processing body (P body) and stress granule
124969609
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
124969609
NCBI-ProteinID:
XP_047388631
LinkDB
All DBs
Position
17:22374115..22408581
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AA seq
1129 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
GPGGAGAGAAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPI
HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETV
LECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLS
WLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAY
QYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVII
WLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNF
QVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLP
DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQ
LTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSS
ADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVP
VVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALS
AFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTE
AANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAF
QGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLL
NYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDR
SSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRG
APKSKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQ
PGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcaccttcctggacacagaggag
gctgagctgcttggcgccgacacgcagggctccgagttcgagttcaccgacttcaccctc
cccagccagacgcagacgccccccggtggccccggcggccccggaggaggcggcgcggga
ggcccgggcggcgcgggcgcgggcgctgcggccggacagctcgacgcgcaggttggacct
gagggcatcctgcagaatggggctgtggacgacagtgtggctaagaccagccagctcttg
gccgagttgaactttgaagaagatgaagaagatacctattacacaaaggacctccccatc
catgcctgcagttactgtggaatacacgatcctgcttgcgtggtttactgtaataccagc
aagaagtggttctgtaacggccgtggaaatacttctggcagccacattgtaaatcacctc
gtgagggcaaaatgcaaagaggtgactctgcacaaggacgggcccctgggggagacggtc
ctggagtgttacaactgcggctgtcgcaatgtcttcctcctcggcttcattcccgccaag
gctgactcagttgtcgtgctgctgtgcaggcaaccctgtgcaagccagagcagcctcaag
gacatcaactgggacagctcacagtggcaacccctgatccaggaccgatgcttcctttcc
tggctggtcaagatcccctctgaacaggaacagctgcgggcccggcagatcacggcccag
cagatcaacaagctagaagaactttggaaggaaaacccttcagccaccttggaggacctg
gagaagccaggagtggacgaggagccacagcatgtcctcctgcggtacgaagatgcttac
cagtaccagaacatctttggccccctggtcaagctggaggctgactatgataagaaactg
aaagagtcacagactcaagataacatcacggtcaggtgggacctgggccttaacaagaag
agaatcgcctacttcactttacccaagactgactctggtaatgaggatttagtcataatt
tggttaagagacatgcgactcatgcagggggatgagatatgtctgcggtacaaaggggac
cttgcgcccctttggaaagggattggccacgtcatcaaggtccccgataattatggcgat
gagatcgccattgaactccgtagcagtgtgggggcacccgtggaggtgactcataatttc
caggtggattttgtgtggaagtcaacctcatttgataggatgcagagtgcactgaaaaca
tttgctgtggatgagacctctgtgtcgggctacatttaccacaagttgcttggtcatgag
gtagaggatgtgatcatcaagtgccagctgccgaagcgcttcacagcacaaggactccct
gacctcaaccactctcaggtttatgctgtgaagactgtacttcagagacctctgagtctg
atccagggccctccaggcacagggaagacagtgacatcggccactattgtttaccacctg
gctcggcaaggcaatgggcctgtacttgtctgtgctccgagtaacatagctgtggatcag
ctgacggagaagatccaccagacagggctgaaagttgtgcgcctctgtgccaagagtcgc
gaggccattgactccccagtgtccttcttggctctgcacaaccaaatcaggaacatggac
agcatgccagagctgcagaagctgcagcagctgaaggatgagacaggggagctctcttct
gcggatgagaagcggtaccgggccctgaagcgcacggctgagagagagctactcatgaat
gcagatgtcatctgctgcacctgtgtgggcgctggtgacccaaggctcgccaagatgcag
ttccgctccatcttaatcgatgagagtacccaagccactgagccagagtgcatggttccc
gtggtcctcggagccaagcagctgatcctcgtgggtgaccactgccagctgggcccagtg
gtgatgtgcaagaaggcggccaaggctggactgtcgcagtcactctttgagcgcctggtg
gtgctgggaattcgtcccatccgcctgcaggtccagtaccggatgcaccccgccctcagt
gccttcccatccaacatcttttacgagggctctctccaaaacggcgtcactgcagcggac
cgtgtgaaaaaggggtttgacttccaatggccccagcctgacaagcccatgttcttctac
gtgacccagggccaggaggagattgccagctcaggcacatcctacctgaacaggacggaa
gctgccaatgtggagaagatcaccacaaagctgctgaaggcgggtgccaagcctgaccag
attggcattatcacaccctacgagggccagcgctcctacctggtgcagtacatgcagttc
agcggctctctgcacacgaagctctatcaggaggtggagatcgctagcgtggatgccttc
cagggacgtgagaaggacttcatcatactctcctgtgtacgcgcaaatgaacaccaagga
attggttttttaaatgaccccagacgtcttaatgtggccctgaccagagctaggtatggt
gtcatcatcgtgggcaacccgaaggctctgtcaaagcagccactgtggaaccacctgctc
aactactacaaggagcagaaggtgctggtagaggggccgctgaacaacctgcgtgagagc
ctcatgcagttcagcaagccccggaagcttgtcaacaccatcaacccgggggcccgcttc
atgacaacagccatgtatgatgcccgtgaggccatcatcccaggatccgtctatgaccgg
agcagccagggtcggccttcgaacatgtacttccagacccatgaccagatcggcatgatc
agtgctggccccagccacgtggccgccatgaacattcccattcccttcaacctggttatg
ccacccatgccgccgcccggctactttggacaagctaacgggccggctgcaggccggggt
gcccccaagagcaagactggtcgtgggggacgccagaagaaccgctttgggcttcctggg
cccagccagaccaaccttcccaacagccaggccagccaggatgtggcgtcacagcccttc
tcacagggcgccctgacgcagggctacatctccatgagccagccctcccagatgagccaa
cctggcctctcccagcccgagctgtcccaggacagttaccttggtgatgagtttaaatca
cagattgatgtggcgctatctcaagactccacataccagggagaacgggcgtaccaacat
ggcggggtgacggggctgtcccagtactag
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