Sciurus carolinensis (gray squirrel): 124969883
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Entry
124969883 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RBBP6-like
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ncar04121
]
124969883
Enzymes [BR:
ncar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124969883
Ubiquitin system [BR:
ncar04121
]
Ubiquitin ligases (E3)
U-box type E3
124969883
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DWNN
zf-CCHC_2
U-box
zf-C3HC4_2
zf-C3HC4_3
zf-CCHC
zf-RING_UBOX
zf-RING_2
zf-C3HC4
zf-RING_5
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
124969883
NCBI-ProteinID:
XP_047388837
LinkDB
All DBs
Position
18:complement(23717427..23747419)
Genome browser
AA seq
1794 aa
AA seq
DB search
MSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDD
NALIPKNSSVIVRRIPIGGVKSTSKTYVISRTEPVMGTTKAIDDSSASITLAQLTKTANL
AEANASEEDKIKAMMSQSGHEYDPINYMKKPLGPPPPSYTCFRCGKPGHYIKNCPTNGDK
NFESGPRIKKSTGIPRSFMMEVKDPNMKGAMLTNTGKYAIPTIDAEAYAIGKKEKPPFLP
EEPSSSSEEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCH
QNDVSPDALIANKFLRQAVNNFKNETGYTKRLRKQLPPPPPPIPPPRPLIQRNLQPLMRS
PISRQQDPLMIPVTSSSTHPAPSISSLTANPSSLAPPGPGNPSSTPAPVPDITATVSISV
HSEKSDGPFRDSDNKILPAAALASEHPKGTSSIAITALMEEKGYQVPVLGTPSLLGQSLL
HGQLIPTTGPVRINAARPGGGRPGWEHSNKLGYLVSPPQQIRRGERSCYRSINRGRHHSE
RSQRTQGPSLPATPVFVPVPPPPLYPPPPHTLPLPPGVPPPQFSPQFPPGQPPPAGYSVP
PPGFPPAPANLSTPWVSSGVQTAHSNTIPTTQAPPLSREEFYREQRRLKEEEKKKSKLDE
FTNDFAKELMEYKKIQKERRRSFSRSKSPYSGSSYSRSSYTYSKSRSGSTRSRSYSRSFS
RSHSRSYSRSPPYPRRGRGKSRNYRSRSRSHGYHRSRSRSPPYRRYHSRSRSPQAFRGQS
PNKRNVPQGETEREYFNRYREVPPPYDIKAYYGRNVDFRDPFEKERYREWERKYREWYEK
YYKGYAAGAQPRPSANRENFSPERFLPLNIRNSPFTRGRREDYVGGQSHRSRNIGGNYPE
KLSARDTHNQKDNTKSKEKESENAPGDGKGNKHKKHRKRRKGEESEGFLNPELLETSRKS
REPTGVEESKTDSLFVLPSRDDATPVRDEPMDAESITFKSVSEKDKREXDKPKTKGDKTK
RKNDGSAVSKKENVVKPAKGPQDKLDGEREKSPRSEPPLKKAKEETPKTDTSKSSSSSQK
DEKIVGTPRKAHSKSTKEHQETKPVKEEKVKKDYSKDVKSEKLTSKEEKAKKPNEKNKPP
DSKGEKRKRKTEEKGAEKDFESSVKISKLEVTEIVKPSPKRKIEPDIEKMDRTPEKDKTS
SSAAPAKKIKLNRETGKKIGSTENIASTKEPSEKLESTSSKVKQEKGKGKVKRKVTGTEG
SSSTLVDYTSTSSTGGSPVRKSEEKTDTKRTVIKTMEEYNNDNTAPAEDVIIMIQVPQSK
WDKDDFESEEEDVKSTQPVPSVGKPASVIKNVSTKPSNTVKYPEKESEPSEKIQKLAKEV
SHEIMQHEVKSSKNTSSGEKGKTKDRDHSVLEKENPEKRKNSTQQEKDSNLDRLNEQGNF
KSLSQSSKETRTSEKHDSIRGSSNKDFTPNRDKKTDYDNREYSSSKRRDERNELTRRKDS
PPRSKDSASGQKNKPREERELPKKGTGDSKKSNSSPPREKKPHDQKAPYDAKRSSEETKS
VDKNPGKDREKHVVEARNNKESNSSKLLYVLNPPDPQVEKEPITGQIDKNAVKPKPQLSH
SSRLSSDLTRETDEAAFEPDYNESDSESNVSVKEEETSGTGNISKELKDKMTEKAKESLD
TAAVPPVGVSRSQSQSSPSVSPSRSHSPSGSQTRSHSSSASSAESQDSKKKKKKKEKKKH
KKHKKHKKHKKHAGTEVELEKSQKHKHKXKKSKKSKDKEKEKEKDDQKVKSVTV
NT seq
5385 nt
NT seq
+upstream
nt +downstream
nt
atgtcctgtgtgcattataaattttcctctaaactcaactatgataccgtcacctttgat
gggctccacatctccctctgcgacttaaagaagcagattatggggagagagaagctgaaa
gctgccgactgcgacctgcagatcaccaacgcgcagacgaaagaagaatatactgatgat
aatgctctaattcctaagaattcatccgtgattgttagaagaattcccataggaggtgtt
aaatctacaagcaagacatatgttataagtcgaactgaaccagtgatgggaactacaaaa
gcaattgatgactcttctgcatctattactctggcccagcttacaaagactgccaatctg
gctgaagccaatgcttctgaagaagataaaataaaagcgatgatgtcgcaatctggccat
gaatacgacccaatcaattacatgaagaaacctctaggtccaccacctccatcttatacc
tgtttccgttgtggtaaacctggccattatattaagaattgcccaacaaacggggataag
aactttgaatctggtcctaggattaaaaagagcactggaattcccagaagttttatgatg
gaagtgaaagatcctaatatgaaaggtgcaatgctcaccaacactggaaaatatgcaata
ccaactatagatgcagaagcatatgcaattgggaagaaagaaaaaccaccctttttacct
gaggaaccatcttcttcctcagaagaagatgatcctattccagatgagttgttgtgtctc
atctgcaaagatattatgactgatgccgttgtcattccctgctgtggaaatagttattgt
gatgaatgtataagaacagcactcctggaatcagatgaacatacatgtccaacatgccat
caaaatgatgtctctccagatgctttaattgcgaataagtttttacgacaggctgttaat
aacttcaaaaatgaaactggctataccaaaagattaagaaaacaattacctccaccacct
cctccaataccacccccaagacccctcattcagcggaacctgcaacctctgatgagatct
ccaatttcaagacagcaagatcctcttatgattccagtgacatcatcatcaactcaccca
gctccctctatatcttcactaactgctaatccatcttccttggcccctcctgggcctgga
aatccatcttctaccccagctcctgtacctgatataactgcaacagtatccatatcagtc
cattcagaaaaatcagatggacctttccgtgattctgataataaaatactgccagctgca
gcccttgcatcagaacacccaaagggaacctcctcaattgcaattactgctcttatggaa
gagaagggttaccaggtgcctgtccttggaaccccatctttgcttggacagtcactatta
catggacagttgatccccacaactggtccagtaagaataaatgctgctcgaccaggtggt
ggccgaccaggttgggaacattccaataagcttggatatctagtttctccaccacagcaa
attagaagaggagagagaagctgctacagaagtataaaccgtgggcgacaccacagcgaa
agatcacagagaactcaaggcccatcattaccagcaactccagtctttgtacctgttcca
ccacctcctttgtatccacctcctccccacacacttcctctccctccaggtgttcctccc
ccacagttttctccacaatttcctcctggccagccaccacctgctgggtatagtgtccct
cctccagggtttcctcctgctcctgccaatttatcaacaccttgggtatcatcaggagta
cagacagctcattcaaataccatcccaacaacacaagcaccacctttgtccagggaggaa
ttctatagagaacaacgccgactaaaagaagaggaaaagaaaaagtccaagctagatgag
tttacaaatgattttgctaaggaattgatggaatacaaaaagattcaaaaggagcgtagg
cgctcattttccaggtctaaatctccctatagtggttcatcatattcaagaagttcatat
acttattctaaatcaagatctggttcaacacgttcacgctcttattctcgatcattcagc
cgctcacattctcgttcctattcacgatcacctccataccctagaagaggcagaggcaag
agtcgcaattaccgttctcggtctagatctcatggatatcatcggtctaggtcaaggtct
cccccatatagacgctatcattcacgatcaagatctcctcaagcatttaggggacagtct
cccaataagcgtaatgtacctcaaggagaaacagaacgtgaatattttaataggtacaga
gaagttccaccaccttatgacataaaagcttattatgggaggaatgttgactttagagac
ccatttgaaaaagagcgttaccgagaatgggagagaaaatacagagagtggtatgaaaaa
tactataaaggttatgctgctggagcacagcctagaccctcagcaaatagagagaatttt
tctccagagagatttttaccacttaatatcaggaattcacccttcacaagaggtcgcaga
gaagattatgttggtggacaaagtcacagaagtcgaaatataggtggcaactatccagaa
aagctttcagcaagagacacgcacaatcaaaaggataatacaaagtcaaaagagaaggag
agtgaaaatgctccaggagatggcaaaggaaataagcataagaaacatcgaaaaagaagg
aaaggggaagagagtgaaggttttctgaacccagaattattagagacttctaggaaatca
agagaacctacaggtgttgaagagagtaagacagactcattgtttgttctcccaagtaga
gatgatgctacacctgttagggatgaaccaatggatgcagaatccatcactttcaaatca
gtgtctgaaaaagacaagagagaanaagataaaccaaaaacaaaaggtgacaagaccaaa
cggaaaaatgatggatctgccgtgtccaaaaaagaaaatgtcgtaaagcctgctaaagga
ccccaagataaactagatggagagcgtgaaaaatctcctcggtctgaacctccacttaag
aaagccaaagaggagactccaaagactgatacttctaagtcatcatcttcctctcagaaa
gatgaaaagatcgttggtacccccagaaaagctcactcaaaatcaactaaagaacaccag
gaaacaaagccagtcaaagaggaaaaggtgaaaaaggactattccaaagatgtcaagtca
gaaaagctaaccagtaaggaagaaaaggcaaagaaacctaatgagaaaaacaaaccccct
gatagtaagggagaaaagagaaaaagaaagactgaagaaaagggggcagagaaagatttt
gaatcttcagtgaaaatctctaaactagaagtaactgaaatagtgaaaccatcaccaaaa
cgcaagatagaacctgatattgaaaaaatggataggaccccagaaaaggacaaaacttca
tcatcagctgccccagccaaaaaaatcaaactcaaccgagaaactgggaagaaaattgga
agcacagaaaatatagctagtacaaaagaaccctctgaaaagctggagtccacatctagc
aaagttaaacaggaaaaaggcaaaggaaaggtcaaacgaaaagtaactggaactgaagga
tccagctcgactcttgtggattataccagtacgagctcaactggaggcagtcctgtgcgg
aaatcggaagagaaaacagatacaaagagaactgtcattaaaaccatggaagaatataat
aatgacaatactgctcctgccgaagatgttattattatgatccaggttcctcagtccaaa
tgggataaagatgactttgaatctgaggaagaagatgttaaatccacacagcctgtacca
agtgtgggaaaacctgccagtgttataaagaatgttagtactaagccatcaaatacagtc
aagtacccagagaaagaaagcgagccatcagagaaaattcagaaactcgccaaagaagtg
agccatgagattatgcagcatgaagtcaaaagttcaaaaaacacttcatctggtgaaaaa
ggaaaaaccaaagatcgagatcattcagtgttagaaaaagaaaaccctgaaaaaaggaag
aatagcactcaacaagagaaagatagtaatttggaccgtctgaatgaacaaggaaatttt
aaaagtctgtctcaatcttccaaagagactagaacttcagaaaagcatgattccatccgt
ggttcctcaaataaagacttcactcccaatagagacaaaaaaactgactatgacaacaga
gagtactcaagttccaaacgcagagatgaaaggaatgagttaacaagaagaaaagactct
cctcctcggagcaaagattctgcatctggacagaaaaataaaccaagggaggagagagag
ttacctaaaaaaggaacaggagattccaaaaaaagtaattctagtccaccaagagagaaa
aaacctcatgatcagaaagccccttacgatgctaagcgctcaagtgaagagacaaaatct
gtagataagaatcctggtaaggatcgagagaagcatgtagtagaggcacggaacaataaa
gagtcaaatagtagtaaattactttatgtacttaacccaccagacccacaggttgaaaaa
gaaccaattactggtcaaattgacaagaatgctgtcaagcctaaaccccagttaagtcat
tcgtctagactgtcctctgacttaactagagagactgatgaggctgcttttgaaccagac
tataatgaaagtgacagtgaaagtaatgtatctgtgaaagaggaagaaacttcaggaact
ggaaacatttctaaggagctgaaagataaaatgacggagaaagcaaaggagagcctggac
acggcggcagtccccccagtgggcgtgagcaggagccagagtcaaagcagccctagcgtt
agtccaagtagaagtcacagcccttctggaagccagacccgaagccacagtagcagtgcc
agctcagcagaaagtcaggacagcaagaagaagaagaaaaagaaggaaaagaaaaagcac
aagaaacataaaaagcataagaagcataagaagcatgcaggcactgaagtagaattggaa
aaaagccagaaacacaaacacaagnaaaagaagtcaaagaagagcaaagacaaagaaaag
gagaaggagaaagatgaccaaaaagtgaaatctgtcactgtgtaa
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integrated database retrieval system
