Sciurus carolinensis (gray squirrel): 124969944
Help
Entry
124969944 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: phospholipid-transporting ATPase ABCA3-like
KO
K05643
ATP-binding cassette, subfamily A (ABC1), member 3
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
124969944
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ncar02000
]
124969944
Transporters [BR:
ncar02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
124969944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_23
RsgA_GTPase
AAA_29
AAA_15
Motif
Other DBs
NCBI-GeneID:
124969944
NCBI-ProteinID:
XP_047388903
LinkDB
All DBs
Position
18:complement(25805232..25892623)
Genome browser
AA seq
1582 aa
AA seq
DB search
MTVKFRQFTLLLWKNFTLKKRQWILLIMEXFLELLFTVILLILRNSVSTKHMDKLVFAKQ
SINTLPSYFLNTNKQRNWELVYVPSNSEAVNNLIEMVQQTLSNKLKIHGFTSEKDFEEYI
KYDKNSDHVMAAIVFDHDFVHSEDPLPLEVRYHLRFSYLLRNTSRSTRLLVIPKEDHGWC
TDRLFPVYLSQGPRNPLEPDGGVPGYIREGFLAVQHAVDKAIMKYHAKEASAEIVKHTTV
FIKRFPFPAFLDDNFLTYLSQIWPPMILFIFSLTVLTILHTIVQEKETKLKDYLLIMGLT
RWQVWGADFVTFFLTLLITISLMTLFLFIKIVKLPIIRYSDPLLVFSFLLLYGINTILFA
FMLTTFFSKALFSLASAESCPKLQAILKLHPFILLEISVGQAWNLKPRFIGEESYDGFFE
PEPEHLVARIQIKNLSKVFKMGNTVKEAVRNLTLNLYEGQITALLGDNGAGKTTALSMLT
GLFPPTSGKACIYGFEITKDMFHIRKSLGFCPQHDLLFDYLTVFEHLYFFAQLKALPPDI
CTKEINNILDVFKMGDKKHSFPKTLSGGMKRKLSISIALVGNSKVVMLDEPTAGMDLISR
RATWDLLQQKKNGRTILFTTHYMDEADLLGDRVAIMAKGDLQCCGSSLFLKQKYGAGYHM
VMVKEPYCKANEVTRLIYHYVPNAILENNIGAELSFILPKEYVNRFEALFTELETHGVKL
GIASFGASVTTMEEVFLQVSKLADSSMNFTANQLSSMFDSKEVETERTVDDKQQSDSLMP
QDLSNIQFNTGIPLCIQQFYALLLKRALYTFRHWRVMLLQILILLIFTAFVLKAILYYSE
VKDAPVLELNLQQYGQSFVPFSISGEREVAGRFAERMRFMLRSENHILQLVSGNVEDFLL
RTKRCSQQCIVAFNLEVYRSRTIITALFNNQAYHAAPIALTVVDNIMYKFISGPTASISV
FNKPQPRTVNQRVKEQFLEGIKGHDIAFSLFFSVAFMASSFSLLTVSERVCKAKHIQFVS
GAYIGIFWLSALFWDFIVFLVSSSLLLVVFYVCNVKAFLEDNHYVDVLFILMLFGWSTIP
LIYLMSFMFSSSAAAYTRLLIFNVLTGISSFFLVYMIDANVMDLGIFNKTLVSIFFLLPT
HNLAKSISGFYDNFRTQRYCNITSEDCKINNIKYEENYYGFQGHGIGKYVIAMIVTGFLF
LILLFLIEAYLWTCKSLCCNFLYGCFFRKQKRIQVRKSTLVPEDQNVINERKEILEYSSK
KLSSLDGPLVLKELLKIYFHCVPVVAVDKLTFKVNKGECFGLLGFNGAGKSSTLKMLTGD
ETITSGEAIIDGRNILTKMTEIRQRISYCPAHNPLLEHLTGYEMLTLHAHLRGVPKQYIP
AYVKNIIRALLLDAFADELIKNYSGGTKRKLSTGIALLGRPDIIFLDKPSSGMDPVARRF
LWDIVLRTRESGKAIVLTSHSMEECEALCSRLAIMVNGKFKCLGSPRYLKNKCGSGYTLL
AKTKRHKQAEMQELKTFIKTIFPDSSLTHEHEGMVHYHIPSKTFTWGKVFGILESIKDEY
GLEDYSISQITLEQVFLRFAQT
NT seq
4749 nt
NT seq
+upstream
nt +downstream
nt
atgacagtgaagttcaggcagtttacacttcttctttggaagaattttactttaaaaaaa
cggcaatggattcttctcatcatggaantttttttggaactgcttttcaccgttattctt
ttgatactacgtaattctgtctctacaaagcacatggataagcttgtgtttgcaaaacag
tccataaataccctgccttcttacttccttaataccaacaagcaaagaaattgggaactg
gtttatgtcccttctaacagtgaagcagtgaacaatcttattgaaatggtacaacaaact
ttgagcaataaattgaaaattcatggctttacttcagagaaagactttgaagaatacatt
aaatatgataagaactctgatcatgtgatggctgctattgtttttgaccatgactttgta
cacagtgaggaccccttgccacttgaggttaggtaccacttgcgtttcagttatttattg
agaaatacctcacgatctacaagacttttggtgattccaaaggaggatcatggctggtgc
acggatcgtctttttccagtttacctctcacaagggcccaggaaccccttggagcccgat
ggaggtgttcctggatatatcagagaaggattcctggctgtacaacatgctgtggacaaa
gccatcatgaagtatcatgcaaaagaagcatccgcagaaattgttaaacacacgactgtt
tttataaaacgatttccatttccagcattccttgatgacaactttcttacatacctcagt
cagatatggcccccaatgatcttatttatcttctcattaactgtactcacaatactccat
accattgttcaggaaaaggaaacaaaattaaaggattaccttctaataatgggactgaca
cgctggcaggtctggggtgctgattttgtcacattcttcttgacacttttgattaccatc
agtttgatgactttgttcctattcattaagattgtaaaactaccaatcattcgctatagt
gacccattgctggtgttttcttttttgttactttatggcatcaatactatcctcttcgcc
ttcatgctcaccacattcttcagcaaagcactattctctctagcttctgcagaatcttgc
cctaagcttcaggccatcctgaagctacatccctttatccttctggaaatctctgtgggt
caagcatggaatctaaaacccagatttattggagaagaaagttatgatggattctttgaa
cctgaacctgaacacttggtggctcgtatacaaattaaaaatctgtccaaggtgttcaag
atggggaatactgtcaaagaagcagtaagaaacctgactctaaatttatatgaggggcag
atcactgctcttctaggagataatggagcaggaaagaccactgccttatctatgctcaca
ggtctttttccccctacaagtggaaaagcatgtatttatggatttgagattacaaaagat
atgtttcatatccggaagagcctgggcttctgtccacaacatgatcttttgtttgattat
ttaacagtatttgaacacctttacttttttgcccagctgaaagcattgcctccagatata
tgtacaaaggaaattaataatatcttggatgtttttaaaatgggagataaaaaacattca
tttcccaagacactgagtggagggatgaaacggaagctttctatcagtatcgcacttgta
gggaattctaaggtggtgatgttagatgagccaactgctggaatggacctgatctcaagg
agagccacctgggatctccttcaacagaaaaaaaatggccgtaccatcctatttaccact
cattatatggatgaagcggatcttctgggtgaccgcgttgccatcatggccaagggggac
ttgcagtgctgtggctcttcattgttcctcaagcaaaaatatggtgcaggataccacatg
gtcatggtgaaggaaccatattgtaaagctaacgaagttacccgtcttatatatcattat
gtaccaaatgccattttggagaacaatattggagctgaattatcatttatcttacctaaa
gagtacgtaaataggtttgaagctttgttcactgagctggaaactcatggagtaaagctg
ggcattgccagttttggtgcctctgtcacaaccatggaagaagtcttccttcaggtcagc
aaattggcagactcctcaatgaatttcacagccaatcagctctcctccatgtttgattct
aaagaagttgagacagaacgcactgtggatgataagcaacagagtgactccttgatgcca
caggatctctctaacattcagtttaatactgggattcctctttgcatccaacagttctat
gctttgctgctaaaaagggccttgtatacttttcgtcactggagggtaatgttactgcag
attttgatactactgattttcactgccttcgtcctaaaagccatcctctactattcagaa
gtgaaggatgctcctgttttggagttgaatttgcaacaatatggtcaatcttttgtccct
ttctctatctctggagaaagggaagtggctggtcggtttgctgaacgcatgagatttatg
ctaagaagtgagaaccacattcttcaactagtgagtggtaacgtagaagacttccttttg
agaactaaaagatgtagtcagcaatgtattgttgcttttaatcttgaggtctacagaagc
agaaccatcatcactgctctgtttaacaaccaggcataccacgccgctccaatagcccta
actgtagtcgacaatattatgtacaagttcatctctggtcccactgcttctatctctgtc
tttaacaagcctcaacctcgaactgtcaaccaaagagtaaaggaacaattccttgagggc
attaaaggacatgatattgccttcagtttgttcttcagcgtagccttcatggctagtagt
ttttctctcctgacagtcagtgagagagtctgtaaagcaaagcacattcagtttgtaagt
ggagcatatattggcattttctggctttctgctttgttttgggattttatcgtcttctta
gtttcttcctccctactactggtagtcttctatgtctgtaacgtgaaagcatttttggag
gacaaccactatgtagatgtcttgttcatcttaatgctgttcggctggtctaccattccc
ttaatatatttgatgagcttcatgttttccagcagtgctgctgcctacaccagacttctt
atatttaatgttcttacaggcatttctagctttttcttggtctacatgatagatgctaat
gtaatggatttgggtatattcaacaaaacattggttagtatattctttctgcttcctact
cacaaccttgcaaagtccatcagtggattttatgataacttcagaacccagaggtactgc
aacatcacttctgaagactgtaagattaataacattaaatatgaagaaaattattatgga
tttcaaggtcatgggattggaaaatatgttattgccatgattgtcactggcttccttttt
ctcatcctacttttcctcattgaggcctacctctggacttgtaaatctctttgctgtaat
ttcttatatggctgcttcttcagaaaacaaaagaggatacaagtcagaaaaagcacatta
gtacctgaagatcaaaatgtgatcaatgagagaaaggaaatcctagaatattcctcaaag
aaactatcatccttagacggacctctggtccttaaggaactcttgaagatatattttcac
tgtgtgcctgttgtggcagtagataaactaacatttaaagttaataaaggggagtgtttt
ggactgcttggtttcaatggagctgggaaaagcagcaccctcaaaatgttgactggagat
gagaccattacctctggggaggccataattgatggcagaaatatcctcacaaagatgaca
gagattcgccaacgaatcagctactgccccgcacataacccgttgctagaacacttaacg
gggtatgagatgctaaccttgcatgcccatctgaggggagtccccaagcaatatattcct
gcttatgttaaaaacataataagagcacttctcctggatgcctttgcagatgaactcatc
aaaaactacagtggtggtaccaagcgtaagctaagtacaggtattgccctgctgggaagg
cctgatatcatcttcctggataagccatcttctgggatggatcctgtggcccgacgcttc
ctctgggacatagtcttacggacccgtgagtccggcaaggccattgttctaacctcccat
agtatggaagaatgtgaggctctgtgttcaagactggccattatggtaaatgggaagttc
aagtgcctaggcagtccacggtatctcaagaacaagtgtggaagtggatacactttactg
gccaaaaccaagaggcataagcaggcagaaatgcaggagctcaagacattcatcaaaacc
atctttccagacagctccctaacacatgagcacgaagggatggtccattaccacataccc
agcaagacctttacctggggaaaggtatttggtatcttggagtcaatcaaagatgaatat
ggattagaagattattccattagtcagatcacactggagcaagtattcctgaggtttgcc
cagacatga
DBGET
integrated database retrieval system
