Sciurus carolinensis (gray squirrel): 124969946
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Entry
124969946 CDS
T08117
Name
(RefSeq) phospholipid-transporting ATPase ABCA3-like
KO
K05643
ATP-binding cassette, subfamily A (ABC1), member 3
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
124969946
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ncar02000
]
124969946
Transporters [BR:
ncar02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
124969946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
SMC_N
SRP54
AAA_23
AAA_30
AAA_27
Halo_JAB_MPN
Motif
Other DBs
NCBI-GeneID:
124969946
NCBI-ProteinID:
XP_047388905
LinkDB
All DBs
Position
18:complement(26223195..26360739)
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AA seq
1677 aa
AA seq
DB search
MNSLWLKQFSVLLWKNFHLKMREMTTLIMEVLFIFLFFLWTLTTRKYTHKKLINATTFDS
LPLKLPDFLINTNLTYELVYVPSESDIAKRITEMVKNDLKFNFKVQGFPSEKSFENYIRS
GNNSNPVLAAIIFDHNFESSDENLPLRVKYHLRFGKFHKTSSGTTAEDEKKTNWNTHLLF
PSIPPQNRRNTLEKDGGDPGYIREGFLTLQHSLDKAIMIHHGGEAAERMFENTDIYVKRF
PYPSYYHDGFMWQFIMIFPWTVLFSFSQVILVVVGTIVLEKEKRLKEYQLMIGLSNAMLW
SAYFITFLFLYSIIVSVLCILLFYQIVQETVLQKSDTTFIFVFFLFYAIASILFGFMIST
FFNKSFLATTIASFLHSILFLPYIVFIRRYDSMSLREKLSICLITNTAMGMGTDLICRLE
MKGFGARWNNFFLQVSPDDDLTLAHVMGIFLIDACLYALVAWYVDAVFPGKYGVPKPWNF
FLQKSYWFGEPALQSREISQISDILSSDHIEAEPIGLPVGIRIQHLHKEFTFGDATVVAV
RNLSLNFYEGQISVLLGPNGAGKTTTLSILTGFYLPTSGKVYISGYDISKEMVEVRKSLG
LCPQDDILFPKLTVLEHLYFYCVIKGVPPKKHTEEINKMLTAFDLKHKRNEFSGNLSGGM
KRKLSIMIAFIGGSKVVILDEPTSGMDPISRRATWNLIQQYKEDRTILLTTHHMDEADIL
GDRIAIMVLGTLQCCGSSVFLKKLYGVGYHIIMVKNPNCDVEKISELIKDHVPTASMENN
IAAELSFVLPKEYTHSFEDLFLEIEERKEELGIAGFGISMTTLEEVFFKVSNTANYKVNQ
EPSTLDKNSNSNNQNMNASRNFERSQVDFLDKNSNMSFNTGLALHKQQFYAMFLKRAVFN
WRNWKMLLLQILALLGFMYLLMRRVAIPPTPDEPAREMDLGQYGKTIVPFTVSGSSDLTE
NFKKNLEIILKDKKQILKEVEGDLQEYLVNSEECVYSCIIAFSIEVTEIKRTVIFWFNNE
AYHSPSLSLAVLDNIIFMILSGPDASITVSNKPQPKVIIHKKPQIRETQGLQVVFNLNFG
MSIFVSGFCILTVTERVTKAKHIQFLSGVYTFNFWISSLFWDFIIYFAACCLLLVVFVIT
GSDILVGNGNILHTAFILTVFGWSVIPFIYLFSFLYSNSTGAYIKLFAFNECVGFLGIIV
DLVINSIPGFDTTTKNIMLNSLILIPMYNLGMSVMKFYELQELKKLCSSSEMSGSSRCGP
EKIGISVYSLDENGIGRYMIAMAVTGFVYFLLIFLLETVLRKVKTFMYRYIFFGIFKKMN
KNRISKEFSGDSEDEDVQNERSRIIDKSLESLDATVVIKELTKIYFQFPAILAVRNISVA
IKKEECFGLLGLNGAGKTSTFQILTGEQIATSGDVFIQGFSITTSLLKVRSKIGYCPQFD
ALLDHMTVQETMIMYARLWGIPENNINYYVNYLLKLLNLEPHANKLTYTLSGGNKRRLST
AIAIMGRPLVVFLDEPSTGMDPVARRLLWNIVTKTRDNGKVIILTSHSMEECEALCTRLA
IMVQGKFKCLGSPQHLKNKFGDVYTMFVKFKSDTDPEVIENFKIFVADTFPRSELKQEHQ
GVLNFYVPSKENSWGKVFGTLEKAKEQFNLEDYSISQITLEQVFLTFANVNRPAGDS
NT seq
5034 nt
NT seq
+upstream
nt +downstream
nt
atgaattcactgtggctcaagcagttttcagtccttctctggaaaaatttccacttaaag
atgcgggagatgactactttgattatggaagtcttgtttatatttctgttctttttatgg
actttgactactcgaaaatatactcacaagaagcttataaatgctaccacttttgattct
cttcccctgaagcttcctgatttcctcattaatactaacttgacatatgaattggtttat
gtgccttctgaaagtgatatagcaaaacgtattactgagatggtgaaaaatgatttaaaa
ttcaattttaaagttcaaggatttccttcagaaaaatcttttgaaaattacattaggagt
ggaaataattctaatcctgtgctggctgctatcatatttgatcataacttcgaaagcagt
gatgaaaacttgccccttagggtaaaatatcatctgcgctttggtaagttccataaaact
tcttcaggtacaacagctgaggatgaaaaaaagactaattggaatacacatttgctcttt
ccaagtatacctcctcaaaatcgcaggaacaccctggaaaaagatgggggagatcctgga
tacatcagagaagggttccttactttgcaacattccttagataaggccatcatgatacat
catggtggtgaagccgcagaacggatgtttgaaaatactgacatttacgttaagagattt
ccatacccttcttattatcatgatgggtttatgtggcaattcataatgatatttccttgg
acagttttattctcattctctcaagttatactagttgttgttgggaccattgtgttggaa
aaggaaaagagattaaaggagtaccagctcatgatcggactcagtaatgctatgctctgg
tctgcgtattttattactttcttattcttatactcaataattgtcagtgtactgtgtata
ctgttattttaccagattgtacaggagacagtcctccaaaaaagtgacacgacatttatc
tttgtcttcttcttgttttatgccattgcctcaatattatttggctttatgatttccaca
ttcttcaataaatcttttttggccactactattgcaagtttcctccattctatcttgttc
cttccatatatagtgttcattagaaggtatgatagcatgagcctcagagagaagctgagc
atctgtctcattacaaatactgcaatgggtatggggactgacttgatatgcaggctggaa
atgaaggggtttggtgctcggtggaataacttcttcttacaagtgagcccagatgatgac
ttaactctggcccatgttatggggatatttttaattgatgcttgcctttatgcccttgtg
gcctggtatgtagatgctgtctttccagggaagtatggtgtgcccaagccgtggaacttt
ttcttgcagaaatcctactggtttggggaaccagcattacagagtagagaaattagccaa
atttctgatatattgtcaagtgatcatattgaagctgaacctattggtttaccagttgga
atcagaattcaacacttgcacaaggaattcacatttggggatgctactgtagtagcagtg
aggaatttgtctttgaatttctatgagggacagatctctgttcttctaggacctaatgga
gcaggaaagaccaccaccttgtccattcttacaggtttctatcttcctaccagcggaaag
gtctacattagtggctatgacatctcaaaggagatggttgaagtcaggaaaagcttgggc
ttgtgcccccaggatgatatactgtttccaaagttgacagtattagaacacctttatttc
tactgcgtgataaaaggagtacctcccaagaagcatactgaagaaattaataaaatgcta
actgcttttgacctgaaacacaagcgtaatgaattttcagggaatctgagtggaggaatg
aagcgcaagctctctattatgatagcatttatagggggctccaaggtggtgatccttgat
gagccaacatcaggcatggatccaatctcaaggagagccacctggaatctcattcagcag
tataaagaggaccgtaccattttactgaccacgcatcacatggatgaagctgacatcctg
ggtgaccgcattgccatcatggtcttggggaccctgcaatgctgtggctcttcagtattc
ctgaaaaaattatatggtgtgggatatcacataatcatggtaaagaatcctaattgtgat
gttgaaaaaatctctgagctgattaaagatcatgtaccaactgccagtatggaaaacaat
attgcagctgaattatcatttgtcctacccaaggagtacacacacagttttgaagacctg
tttttggaaatagaagaaagaaaggaagagctgggcattgctggctttggtatctctatg
actaccttggaagaagttttcttcaaggtcagtaatacggcaaactacaaagtgaaccag
gagccttccacattggacaaaaattcaaattcaaacaaccagaatatgaatgcatccaga
aattttgaaagatcacaagttgacttcctggataaaaattctaatatgtcatttaatact
gggttggctcttcacaagcagcaattctatgccatgttcttgaagcgggcagtgttcaat
tggcgcaactggaaaatgttattgcttcagatcctggcacttctgggtttcatgtatctt
ctgatgagaagagtagctattccaccaaccccggatgagcctgccagggaaatggatttg
ggacaatatggtaaaaccattgtgcctttcacagtttctggaagttctgatttaactgag
aatttcaaaaaaaatcttgagatcatactaaaggataagaaacaaatacttaaggaagta
gaaggtgacctgcaggaatacttggtgaatagtgaagaatgcgtttactcatgtatcatt
gcattttccattgaggttactgaaatcaaaaggacagttatcttttggttcaacaatgaa
gcttaccattcaccatccctatcccttgcagtattagacaacattattttcatgatactt
tctggccctgatgcttctattacagtctccaataaaccccagcctaaagttattattcac
aagaaacctcagataagagaaacacagggactccaggtagtcttcaatttgaattttggt
atgagtatttttgtcagtggcttttgcatcttgacagtgactgagagagttactaaagca
aagcacatccagtttctgagtggggtctacacttttaacttctggatttcttctctattt
tgggatttcatcatctactttgccgcctgctgcttactcctggtggtattcgtgatcact
ggatcggacatattggttgggaatgggaacattttgcacacagcattcattctcacggtg
ttcggctggtctgttattcccttcatatacctgttcagcttcctgtattctaatagcacc
ggtgcatacattaagctcttcgcattcaacgaatgtgtaggctttctaggtattattgtg
gatctcgtaataaacagcataccaggttttgatactactacaaaaaatatcatgcttaat
tcgttgattctgatacctatgtataaccttgggatgagtgtcatgaaattttatgaatta
caagagctaaagaaattgtgttcttcctcagaaatgtctggttcctcaagatgtggtcca
gaaaaaattggaatttctgtatacagtttggatgaaaatggaattggaaggtatatgatt
gcaatggctgtcacaggatttgtttacttcctcttgattttccttctggagaccgtgtta
cggaaagtgaaaaccttcatgtatcgctatattttctttggcatcttcaagaaaatgaac
aagaacagaatatccaaagaattttcgggagactctgaagatgaagatgtacaaaatgaa
agatcgagaatcatagacaagtctcttgaatcgctggatgccacagtggttattaaagaa
ctcaccaagatatattttcaatttccagccattctggctgtgagaaatatctctgttgcc
atcaaaaaggaggagtgctttggattgcttggattaaatggggctggaaaaacttctact
ttccagattttgactggagaacagattgctacctctggagatgtgttcattcaaggcttt
agcatcaccacaagtctcctgaaggtaaggtcaaaaattggttattgtccacagtttgat
gccttgctggatcacatgactgttcaggaaacaatgatcatgtatgccaggttgtggggg
atccctgagaacaacatcaactattatgtgaactaccttttgaaactgctgaatctggaa
ccccatgctaacaagcttacttatactttgagtggaggaaacaaacgtaggctgagcact
gctattgccataatgggaaggcccttagttgtctttctggatgagccatccactggcatg
gaccctgtagcccggcgcctgctctggaacatagtgacaaagacacgtgacaatggcaaa
gttatcatcttgacctctcacagtatggaggaatgtgaggctctctgtaccaggctggcc
atcatggtgcagggaaagttcaaatgcctgggtagccctcaacacctcaagaacaagttt
ggagacgtttatactatgtttgtcaagttcaagagtgatacagatccggaagtaatagag
aattttaaaatatttgttgctgatactttcccacgtagtgagttgaagcaggagcatcag
ggggtcctaaacttctatgttcccagcaaggaaaatagctggggaaaggtgtttggcact
ttggagaaagcgaaagagcaattcaatttagaagactattcaatcagtcagataacactg
gaacaagtcttcctgacctttgctaatgtaaatagaccagcaggtgactcctaa
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integrated database retrieval system
