KEGG   Sciurus carolinensis (gray squirrel): 124970005
Entry
124970005         CDS       T08117                                 
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4 isoform X1
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar03015  mRNA surveillance pathway
ncar05164  Influenza A
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    124970005
 09160 Human Diseases
  09172 Infectious disease: viral
   05164 Influenza A
    124970005
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ncar03021]
    124970005
   03019 Messenger RNA biogenesis [BR:ncar03019]
    124970005
Transcription machinery [BR:ncar03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     124970005
Messenger RNA biogenesis [BR:ncar03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     124970005
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 zf-CCCH_3 Torus zf-CCCH_2 zf-CCHC zf-CCCH_4 zf-C3H1 zf-CCHC_3 Nab2-like_zf-CCCH_
Other DBs
NCBI-GeneID: 124970005
NCBI-ProteinID: XP_047388975
LinkDB
Position
18:complement(8952954..8968689)
AA seq 269 aa
MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGTTEQPP
LPQQTQPPTKQSNNPPLQRSSSLIQLTSQNSSPNQQRAPQVIGVMQSQNSSAGNRGPRPL
EQVTCYKCGEKGHYANRCTKGHLAFLSGQ
NT seq 810 nt   +upstreamnt  +downstreamnt
atgcaggaaatcatcgccagcgtggaccacatcaagttcgacttggagatcgccgtggag
cagcagctcggggcgcagccgctgcccttcccgggcatggacaagtccggggctgctgtc
tgcgaattctttttgaaagctgcctgtggtaaagggggcatgtgcccatttcgccacatc
agcggcgagaagacagtggtttgcaaacactggctacgggggctgtgcaagaaaggggac
cagtgtgaattcctgcacgagtacgacatgaccaagatgcccgagtgctacttctactcc
aagttcggggagtgcagcaacaaggaatgtcccttcctgcacatcgaccccgagtccaag
atcaaggactgcccttggtatgaccgtggcttctgcaagcatggtcccctgtgcaggcac
cggcacacgcggagagtcatctgtgtgaattacctcgtgggattttgcccggaggggccc
tcgtgtaaattcatgcaccctcgatttgaactgcccatgggaaccactgagcagccccca
ctgccgcagcagacgcagcctccaacaaagcaaagtaacaatccgccattacaaaggtcg
tcctccttgatccagttaacgagtcagaactcttctcccaatcagcagagagccccacag
gtcatcggggtcatgcagagtcaaaacagcagtgcaggcaaccggggaccccggccactg
gagcaggtcacttgttacaagtgtggtgaaaaaggacactacgccaacagatgcaccaaa
gggcacttggcctttctcagtggacagtga

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